miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 3' -56.8 NC_004812.1 + 250 0.66 0.885551
Target:  5'- gGCUCCCGCGCGggagGaggggggggucucCCGCG-CGcGCUCc -3'
miRNA:   3'- -UGAGGGUGUGCa---U-------------GGUGCuGC-CGAGc -5'
21722 3' -56.8 NC_004812.1 + 435 0.67 0.864971
Target:  5'- cGCUCUCGCGCGcgcccGCCGCGAgcccgggccgcCGGCgCGc -3'
miRNA:   3'- -UGAGGGUGUGCa----UGGUGCU-----------GCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 459 0.7 0.705804
Target:  5'- -gUCCCGCGCGUcCCGCGccccgcguccgcGCGGCcCGu -3'
miRNA:   3'- ugAGGGUGUGCAuGGUGC------------UGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 554 0.68 0.816299
Target:  5'- cCUCCCgccccggcGCGCGcgGCCGCGuggagccgcgggcGCGGCUCc -3'
miRNA:   3'- uGAGGG--------UGUGCa-UGGUGC-------------UGCCGAGc -5'
21722 3' -56.8 NC_004812.1 + 849 0.66 0.879354
Target:  5'- gGC-CCCGCGCGUGuCCcCG-CGGCcgCGa -3'
miRNA:   3'- -UGaGGGUGUGCAU-GGuGCuGCCGa-GC- -5'
21722 3' -56.8 NC_004812.1 + 3788 0.68 0.799833
Target:  5'- gACggCgCGCACGgcgGCgACGGCGGcCUCGg -3'
miRNA:   3'- -UGa-GgGUGUGCa--UGgUGCUGCC-GAGC- -5'
21722 3' -56.8 NC_004812.1 + 4193 0.66 0.910933
Target:  5'- uAC-CCgGCgggaacgGCGgggACCGCGGCGGCgUCGg -3'
miRNA:   3'- -UGaGGgUG-------UGCa--UGGUGCUGCCG-AGC- -5'
21722 3' -56.8 NC_004812.1 + 4631 0.68 0.817151
Target:  5'- gGCgCCCACACGggcgcggGCgCGcCGGCGGcCUCGu -3'
miRNA:   3'- -UGaGGGUGUGCa------UG-GU-GCUGCC-GAGC- -5'
21722 3' -56.8 NC_004812.1 + 4716 0.67 0.84109
Target:  5'- gGCUgucgCCCaggccgccguagaGCACGcGCCccggggGCGGCGGCUCGg -3'
miRNA:   3'- -UGA----GGG-------------UGUGCaUGG------UGCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 4837 0.71 0.666015
Target:  5'- gGCgUCCagggGCACGgcCCGCGGCGGCgCGg -3'
miRNA:   3'- -UG-AGGg---UGUGCauGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 4875 0.67 0.857472
Target:  5'- aGCggCCCGuggcguCGCGcccgGCCACGGCGGCgcgCGc -3'
miRNA:   3'- -UGa-GGGU------GUGCa---UGGUGCUGCCGa--GC- -5'
21722 3' -56.8 NC_004812.1 + 5610 0.67 0.849776
Target:  5'- -gUCCCcCAgGggGCCGgaGGCGGCUCGg -3'
miRNA:   3'- ugAGGGuGUgCa-UGGUg-CUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 6987 0.73 0.526519
Target:  5'- cGCcCCCAuCGCGUcgcacgaacaucGCCGCGGCGGgUCGg -3'
miRNA:   3'- -UGaGGGU-GUGCA------------UGGUGCUGCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 9461 0.67 0.841889
Target:  5'- uGCUgUCugGCccacGCCGCGACGuGCUCGu -3'
miRNA:   3'- -UGAgGGugUGca--UGGUGCUGC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 10197 0.68 0.825569
Target:  5'- uGCUgCCCcgACGCGgagcugGCCGCGcACGGCUg- -3'
miRNA:   3'- -UGA-GGG--UGUGCa-----UGGUGC-UGCCGAgc -5'
21722 3' -56.8 NC_004812.1 + 12347 0.66 0.903078
Target:  5'- aACUCCCACaccaccuugGCGgggggcgcgcccgGCCGCG-CGGC-CGg -3'
miRNA:   3'- -UGAGGGUG---------UGCa------------UGGUGCuGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 13649 0.66 0.901835
Target:  5'- --aCCCACACGcggaggacguagaaGCCgACGACGGCguuagCGg -3'
miRNA:   3'- ugaGGGUGUGCa-------------UGG-UGCUGCCGa----GC- -5'
21722 3' -56.8 NC_004812.1 + 14748 0.66 0.910933
Target:  5'- gGCUCCCGCGgcugcucCGgggGCgACGACacGCUCGc -3'
miRNA:   3'- -UGAGGGUGU-------GCa--UGgUGCUGc-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 14855 0.67 0.849776
Target:  5'- cGCcgCCC-CGCGgccGCCcgACGACGGCUgGg -3'
miRNA:   3'- -UGa-GGGuGUGCa--UGG--UGCUGCCGAgC- -5'
21722 3' -56.8 NC_004812.1 + 15156 0.68 0.808569
Target:  5'- gGCUcCCCGCACG-ACCugGACcGCcuccgUCGg -3'
miRNA:   3'- -UGA-GGGUGUGCaUGGugCUGcCG-----AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.