miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 3' -56.8 NC_004812.1 + 57056 0.7 0.725372
Target:  5'- aGCUUCUGC-CGgGCCGCGGuCGGCUCc -3'
miRNA:   3'- -UGAGGGUGuGCaUGGUGCU-GCCGAGc -5'
21722 3' -56.8 NC_004812.1 + 19518 0.7 0.705805
Target:  5'- uACUCgCGCGCGaACCGCG-CGGCgcCGg -3'
miRNA:   3'- -UGAGgGUGUGCaUGGUGCuGCCGa-GC- -5'
21722 3' -56.8 NC_004812.1 + 125967 0.7 0.705805
Target:  5'- -gUCCCGCGCGUcCCGCGccccgcguccgcGCGGCcCGu -3'
miRNA:   3'- ugAGGGUGUGCAuGGUGC------------UGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 49700 0.7 0.715623
Target:  5'- -aUCCCGCA-GUACCuguCGGCGGCg-- -3'
miRNA:   3'- ugAGGGUGUgCAUGGu--GCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 76264 0.7 0.715623
Target:  5'- --gCCCGCGCGcGCCGCcucGACGGCgcgcgCGg -3'
miRNA:   3'- ugaGGGUGUGCaUGGUG---CUGCCGa----GC- -5'
21722 3' -56.8 NC_004812.1 + 121031 0.7 0.715623
Target:  5'- cGCUCCCcucgGCGCcgGCgCGCGACGGC-CGg -3'
miRNA:   3'- -UGAGGG----UGUGcaUG-GUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 21892 0.7 0.715623
Target:  5'- aGCUCCCcgaagaACGUcCCGguucgcgcagcCGGCGGCUCGg -3'
miRNA:   3'- -UGAGGGug----UGCAuGGU-----------GCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 33979 0.7 0.725372
Target:  5'- aGCUCCucuucuacCACuGCGaGCCGCccGGCGGCUCGg -3'
miRNA:   3'- -UGAGG--------GUG-UGCaUGGUG--CUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 42705 0.7 0.725372
Target:  5'- aGCUCCUguACGCGgGCCGCGgGCGGUUgGc -3'
miRNA:   3'- -UGAGGG--UGUGCaUGGUGC-UGCCGAgC- -5'
21722 3' -56.8 NC_004812.1 + 152090 0.7 0.695926
Target:  5'- --aCCCGCGCGUcaccGCCgGCGACGuggaGCUCGa -3'
miRNA:   3'- ugaGGGUGUGCA----UGG-UGCUGC----CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 27994 0.7 0.676023
Target:  5'- -aUCCCcgGgGCGUACCGCGGgGGCUg- -3'
miRNA:   3'- ugAGGG--UgUGCAUGGUGCUgCCGAgc -5'
21722 3' -56.8 NC_004812.1 + 130345 0.71 0.666015
Target:  5'- gGCgUCCagggGCACGgcCCGCGGCGGCgCGg -3'
miRNA:   3'- -UG-AGGg---UGUGCauGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 109299 0.74 0.460609
Target:  5'- uGCgcgCCCGCACGUACgCGcCGGCGGCg-- -3'
miRNA:   3'- -UGa--GGGUGUGCAUG-GU-GCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 108507 0.74 0.497781
Target:  5'- aGCgCCCGCACGggGCgCACGGCGGCg-- -3'
miRNA:   3'- -UGaGGGUGUGCa-UG-GUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 132496 0.73 0.526519
Target:  5'- cGCcCCCAuCGCGUcgcacgaacaucGCCGCGGCGGgUCGg -3'
miRNA:   3'- -UGaGGGU-GUGCA------------UGGUGCUGCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 55645 0.72 0.605686
Target:  5'- cGCUCgCGgACGU-CCGCGGCGGCgCGc -3'
miRNA:   3'- -UGAGgGUgUGCAuGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 53399 0.72 0.615736
Target:  5'- aGCUCCCGCACGUAcagcuCCACGAgCGcGUUg- -3'
miRNA:   3'- -UGAGGGUGUGCAU-----GGUGCU-GC-CGAgc -5'
21722 3' -56.8 NC_004812.1 + 82695 0.71 0.645928
Target:  5'- gGCg-CCGCugGgcgccgGCCgACGGCGGCUCGc -3'
miRNA:   3'- -UGagGGUGugCa-----UGG-UGCUGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 142723 0.71 0.645928
Target:  5'- -gUUCCGCACGUcacuuACUACGACGGgUCc -3'
miRNA:   3'- ugAGGGUGUGCA-----UGGUGCUGCCgAGc -5'
21722 3' -56.8 NC_004812.1 + 136496 0.71 0.655981
Target:  5'- cGCUCCCccGCGCGccgcUGCgCGCGGCGcGCUCc -3'
miRNA:   3'- -UGAGGG--UGUGC----AUG-GUGCUGC-CGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.