miRNA display CGI


Results 1 - 20 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 71941 0.65 0.711284
Target:  5'- aGGACGgCGCgggGCG-GcCCugccgcgacgcgcgCCGCGGGAg -3'
miRNA:   3'- -CCUGCgGCGa--CGCaCaGG--------------GGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 95514 0.66 0.68536
Target:  5'- gGGGCGCCGCcuCGa--CCCCGgCGGGGc -3'
miRNA:   3'- -CCUGCGGCGacGCacaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 35469 0.66 0.695004
Target:  5'- -aGCGCCGCgGCGUcggcgcgcgaGaUCCCCGagGGGAu -3'
miRNA:   3'- ccUGCGGCGaCGCA----------C-AGGGGCg-UCCU- -5'
21723 3' -61.7 NC_004812.1 + 154381 0.66 0.665959
Target:  5'- -cGCGCCGC-GCGUGcgCUgggCCGCGGGc -3'
miRNA:   3'- ccUGCGGCGaCGCACa-GG---GGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 673 0.66 0.675676
Target:  5'- cGGGCGgCGCgaggggaGCGcGUCCCCGgGuccGGAg -3'
miRNA:   3'- -CCUGCgGCGa------CGCaCAGGGGCgU---CCU- -5'
21723 3' -61.7 NC_004812.1 + 37594 0.66 0.656218
Target:  5'- cGGugGCCGCccGCGUucaCCCgGCAGu- -3'
miRNA:   3'- -CCugCGGCGa-CGCAca-GGGgCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 30724 0.66 0.675676
Target:  5'- cGGACGCCaCgGCG--UCCgCGCAGGu -3'
miRNA:   3'- -CCUGCGGcGaCGCacAGGgGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 98412 0.66 0.675676
Target:  5'- cGGCGCCGCaGCGUcucgGUgCggcggCCGCGGGGc -3'
miRNA:   3'- cCUGCGGCGaCGCA----CAgG-----GGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 48165 0.66 0.656218
Target:  5'- cGGGCggcgGCCGCgGCGcUGgagaacgcggCCCUGCAGGc -3'
miRNA:   3'- -CCUG----CGGCGaCGC-ACa---------GGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 104998 0.66 0.656218
Target:  5'- cGGGcCGCCGCgGCGccccucgcgCCCCGCGGu- -3'
miRNA:   3'- -CCU-GCGGCGaCGCaca------GGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 144623 0.66 0.675676
Target:  5'- cGGAgcCCGCcgGCGgaaccccGcCCCCGCGGGAc -3'
miRNA:   3'- -CCUgcGGCGa-CGCa------CaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 2347 0.66 0.695004
Target:  5'- aGGACGg-GggGCGcGUCCCCGCcGGAg -3'
miRNA:   3'- -CCUGCggCgaCGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 29908 0.66 0.695004
Target:  5'- aGGugGgCCGCgaUGCGcGg-CCCGCGGGu -3'
miRNA:   3'- -CCugC-GGCG--ACGCaCagGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 153412 0.66 0.695004
Target:  5'- cGGGC-CCGCUGCGccgcgCCgCCGCcuGGAu -3'
miRNA:   3'- -CCUGcGGCGACGCaca--GG-GGCGu-CCU- -5'
21723 3' -61.7 NC_004812.1 + 13446 0.66 0.705556
Target:  5'- gGGACGCCGUggucucgggggugggGgGUGgCgUCGCGGGGa -3'
miRNA:   3'- -CCUGCGGCGa--------------CgCACaGgGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 125472 0.66 0.675676
Target:  5'- -cGCGCgGgaGCcuUGggCCCCGCGGGAg -3'
miRNA:   3'- ccUGCGgCgaCGc-ACa-GGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 48373 0.66 0.68536
Target:  5'- cGGACGCCGCcGCcgggCCCgGCGagcuGGAg -3'
miRNA:   3'- -CCUGCGGCGaCGcacaGGGgCGU----CCU- -5'
21723 3' -61.7 NC_004812.1 + 59607 0.66 0.665959
Target:  5'- cGGGCGgCGCUcgcgaaccggGgGUGgcggCCCCGCAGc- -3'
miRNA:   3'- -CCUGCgGCGA----------CgCACa---GGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 108015 0.66 0.68536
Target:  5'- cGGAUgGCCGCggccGCGUcgCCgCCGguGGAg -3'
miRNA:   3'- -CCUG-CGGCGa---CGCAcaGG-GGCguCCU- -5'
21723 3' -61.7 NC_004812.1 + 55651 0.66 0.68536
Target:  5'- cGGACGuCCGCgGCGgcgcgCCCCGCc--- -3'
miRNA:   3'- -CCUGC-GGCGaCGCaca--GGGGCGuccu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.