miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 7651 0.7 0.431287
Target:  5'- gGGGCGCgaaGCUGCG-Gg-CCCGCGGGc -3'
miRNA:   3'- -CCUGCGg--CGACGCaCagGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 142775 0.72 0.336562
Target:  5'- cGGGCGcCCGCUGCccgcgcgcgGUCCUCGUggAGGAg -3'
miRNA:   3'- -CCUGC-GGCGACGca-------CAGGGGCG--UCCU- -5'
21723 3' -61.7 NC_004812.1 + 151119 0.72 0.358765
Target:  5'- cGGcCGCCGCcGCcgccGUGUCCCCGCGc-- -3'
miRNA:   3'- -CCuGCGGCGaCG----CACAGGGGCGUccu -5'
21723 3' -61.7 NC_004812.1 + 32358 0.72 0.36639
Target:  5'- gGGGCGCCGCcGCGcGcgccCCCCGcCAGGc -3'
miRNA:   3'- -CCUGCGGCGaCGCaCa---GGGGC-GUCCu -5'
21723 3' -61.7 NC_004812.1 + 113455 0.72 0.36639
Target:  5'- cGGGcCGCCGCggugucGCG-GaCCCUGCGGGAg -3'
miRNA:   3'- -CCU-GCGGCGa-----CGCaCaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 62783 0.71 0.374127
Target:  5'- cGGAUgGCCGCggcccugcGCGaGUCCCCGgGGGGc -3'
miRNA:   3'- -CCUG-CGGCGa-------CGCaCAGGGGCgUCCU- -5'
21723 3' -61.7 NC_004812.1 + 9778 0.71 0.389928
Target:  5'- cGGCgGCCGCgcGgGUGU-CCCGCGGGAg -3'
miRNA:   3'- cCUG-CGGCGa-CgCACAgGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 127987 0.71 0.40616
Target:  5'- gGGGCGCCgGCgGCGgcggCCUCGCGGGc -3'
miRNA:   3'- -CCUGCGG-CGaCGCaca-GGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 97223 0.71 0.414433
Target:  5'- -cACG-CGCUGCGUGgggccucgcgCCCUGCGGGGc -3'
miRNA:   3'- ccUGCgGCGACGCACa---------GGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 9988 0.72 0.330099
Target:  5'- -aACGCCGCUgucGCGUGgaggaggugcugccgCCCCGCgAGGAc -3'
miRNA:   3'- ccUGCGGCGA---CGCACa--------------GGGGCG-UCCU- -5'
21723 3' -61.7 NC_004812.1 + 155575 0.72 0.329387
Target:  5'- gGGGCGCgCGCggGCGgccggGcCCUCGCGGGGg -3'
miRNA:   3'- -CCUGCG-GCGa-CGCa----CaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 119947 0.73 0.322325
Target:  5'- -cGCGCUGCUGaCGcUGUCCCUGUGGGc -3'
miRNA:   3'- ccUGCGGCGAC-GC-ACAGGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 126355 0.8 0.116751
Target:  5'- aGGGCcCCGC-GCGUGUCCCCGCGGc- -3'
miRNA:   3'- -CCUGcGGCGaCGCACAGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 149570 0.78 0.13888
Target:  5'- gGGACGCCGCcccuCGcGUCCCCGgGGGAa -3'
miRNA:   3'- -CCUGCGGCGac--GCaCAGGGGCgUCCU- -5'
21723 3' -61.7 NC_004812.1 + 145787 0.78 0.142339
Target:  5'- cGugGCCGaagacCUGCGUGUCCUCGCGGaGAc -3'
miRNA:   3'- cCugCGGC-----GACGCACAGGGGCGUC-CU- -5'
21723 3' -61.7 NC_004812.1 + 152406 0.76 0.204447
Target:  5'- cGACGCCGCcGCG-GUCCCCGCcguucccgccGGGu -3'
miRNA:   3'- cCUGCGGCGaCGCaCAGGGGCG----------UCCu -5'
21723 3' -61.7 NC_004812.1 + 86497 0.75 0.246388
Target:  5'- cGGA-GCCGCUGCGgg-CCCC-CGGGAa -3'
miRNA:   3'- -CCUgCGGCGACGCacaGGGGcGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 149140 0.73 0.288721
Target:  5'- cGGcCGCCGggGCGcgcgGUCCCCGC-GGAg -3'
miRNA:   3'- -CCuGCGGCgaCGCa---CAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 26269 0.73 0.295216
Target:  5'- gGGACGCgGCcGCGcggGUgCCCCGCGGcGAc -3'
miRNA:   3'- -CCUGCGgCGaCGCa--CA-GGGGCGUC-CU- -5'
21723 3' -61.7 NC_004812.1 + 129325 0.73 0.315377
Target:  5'- cGGCGCCGCcgGCGacgcggagGUCCCCGCgcAGGc -3'
miRNA:   3'- cCUGCGGCGa-CGCa-------CAGGGGCG--UCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.