miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 673 0.66 0.675676
Target:  5'- cGGGCGgCGCgaggggaGCGcGUCCCCGgGuccGGAg -3'
miRNA:   3'- -CCUGCgGCGa------CGCaCAGGGGCgU---CCU- -5'
21723 3' -61.7 NC_004812.1 + 722 0.67 0.617147
Target:  5'- cGGCGCCgGC-GCG-GUCgCCgGCGGGGg -3'
miRNA:   3'- cCUGCGG-CGaCGCaCAG-GGgCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 847 0.8 0.116751
Target:  5'- aGGGCcCCGC-GCGUGUCCCCGCGGc- -3'
miRNA:   3'- -CCUGcGGCGaCGCACAGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 1222 0.67 0.646458
Target:  5'- cGGCGCCGCggggGCuccUCCCCGCccGGGc -3'
miRNA:   3'- cCUGCGGCGa---CGcacAGGGGCG--UCCu -5'
21723 3' -61.7 NC_004812.1 + 1815 0.66 0.7046
Target:  5'- cGGACGUCGggGCcg--CCCCGuCGGGGg -3'
miRNA:   3'- -CCUGCGGCgaCGcacaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 2347 0.66 0.695004
Target:  5'- aGGACGg-GggGCGcGUCCCCGCcGGAg -3'
miRNA:   3'- -CCUGCggCgaCGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 2479 0.71 0.40616
Target:  5'- gGGGCGCCgGCgGCGgcggCCUCGCGGGc -3'
miRNA:   3'- -CCUGCGG-CGaCGCaca-GGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 3341 0.68 0.55897
Target:  5'- gGGGcCGCCGCgccccGCGccccgGcCCCCGcCGGGAa -3'
miRNA:   3'- -CCU-GCGGCGa----CGCa----CaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 3433 0.7 0.439863
Target:  5'- cGGCGCCGCcGCGccccccgugGUCCCCGUGGc- -3'
miRNA:   3'- cCUGCGGCGaCGCa--------CAGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 3817 0.73 0.315377
Target:  5'- cGGCGCCGCcgGCGacgcggagGUCCCCGCgcAGGc -3'
miRNA:   3'- cCUGCGGCGa-CGCa-------CAGGGGCG--UCCu -5'
21723 3' -61.7 NC_004812.1 + 4176 0.7 0.475102
Target:  5'- uGACGcCCGCgGCGccGUaCCCgGCGGGAa -3'
miRNA:   3'- cCUGC-GGCGaCGCa-CA-GGGgCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 4190 0.69 0.502432
Target:  5'- uGGACGCCGaggGCGc--CCCCGCGGc- -3'
miRNA:   3'- -CCUGCGGCga-CGCacaGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 4433 0.69 0.484132
Target:  5'- aGGCgGCCccggGCcGCGUGUCCCCGCccGAg -3'
miRNA:   3'- cCUG-CGG----CGaCGCACAGGGGCGucCU- -5'
21723 3' -61.7 NC_004812.1 + 4707 0.69 0.521028
Target:  5'- cGGccCGCCGCgcgaggacgggGCGUGUgCCCGCucgcccGGGAg -3'
miRNA:   3'- -CCu-GCGGCGa----------CGCACAgGGGCG------UCCU- -5'
21723 3' -61.7 NC_004812.1 + 6219 0.7 0.457301
Target:  5'- cGGACGCCGCcccugccgccGCGg--CCCCGCGGc- -3'
miRNA:   3'- -CCUGCGGCGa---------CGCacaGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 6458 0.66 0.656218
Target:  5'- gGGACGaCCGCgggcccggggaGCGgg-CCCUGCGGGu -3'
miRNA:   3'- -CCUGC-GGCGa----------CGCacaGGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 6915 0.69 0.521028
Target:  5'- gGGGCG-CGCUGCG----CCCGCGGGGc -3'
miRNA:   3'- -CCUGCgGCGACGCacagGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 7448 0.68 0.539886
Target:  5'- gGGACGCCGCcccucGcCUCCGCGGGGa -3'
miRNA:   3'- -CCUGCGGCGacgcaCaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 7651 0.7 0.431287
Target:  5'- gGGGCGCgaaGCUGCG-Gg-CCCGCGGGc -3'
miRNA:   3'- -CCUGCGg--CGACGCaCagGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 9778 0.71 0.389928
Target:  5'- cGGCgGCCGCgcGgGUGU-CCCGCGGGAg -3'
miRNA:   3'- cCUG-CGGCGa-CgCACAgGGGCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.