miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 11985 0.72 0.59512
Target:  5'- gGGGCGGGGUUCCgccggcGGGcUCCGGucUCCg -3'
miRNA:   3'- gUUCGCUCCGAGG------CCCaAGGUCu-AGG- -5'
21728 3' -56 NC_004812.1 + 5067 0.72 0.625601
Target:  5'- cCGGGCGGGaGaCUCgGGGggCCGgGGUCCg -3'
miRNA:   3'- -GUUCGCUC-C-GAGgCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 44105 0.72 0.625601
Target:  5'- cCGAGCGAG--UCUGGGUcgUCGGGUCCg -3'
miRNA:   3'- -GUUCGCUCcgAGGCCCAa-GGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 35968 0.72 0.625601
Target:  5'- cCGGGCGGGaGaCUCgGGGggCCGgGGUCCg -3'
miRNA:   3'- -GUUCGCUC-C-GAGgCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 92501 0.71 0.666273
Target:  5'- gAGGCGGcGGC-CCGGcUUCCGgGGUCCg -3'
miRNA:   3'- gUUCGCU-CCGaGGCCcAAGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 19092 0.71 0.676393
Target:  5'- cCGAGCGcucGGGCUCCGGccgcGggCCAGGcCCc -3'
miRNA:   3'- -GUUCGC---UCCGAGGCC----CaaGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 98052 0.71 0.686477
Target:  5'- uCGGGCGccGGCUCgGGGgcggCCGGAgCCg -3'
miRNA:   3'- -GUUCGCu-CCGAGgCCCaa--GGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 147811 0.71 0.696517
Target:  5'- -uGGCGAGGCUCgCGuGGUUCCcucgguacgcgGGGUUg -3'
miRNA:   3'- guUCGCUCCGAG-GC-CCAAGG-----------UCUAGg -5'
21728 3' -56 NC_004812.1 + 97997 0.71 0.696517
Target:  5'- gAGGCacgGGGGCU-CGGGcucgaggUCCGGGUCCg -3'
miRNA:   3'- gUUCG---CUCCGAgGCCCa------AGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 123502 0.7 0.706503
Target:  5'- -cAGCGGGGgUCUGGGgUCgGGcgCCg -3'
miRNA:   3'- guUCGCUCCgAGGCCCaAGgUCuaGG- -5'
21728 3' -56 NC_004812.1 + 29294 0.7 0.716427
Target:  5'- gAGGCGAGGCgcgcagCCGGGgcCC-GAUgCa -3'
miRNA:   3'- gUUCGCUCCGa-----GGCCCaaGGuCUAgG- -5'
21728 3' -56 NC_004812.1 + 154802 0.7 0.716427
Target:  5'- gAGGCGAGGCgcgcagCCGGGgcCC-GAUgCa -3'
miRNA:   3'- gUUCGCUCCGa-----GGCCCaaGGuCUAgG- -5'
21728 3' -56 NC_004812.1 + 135382 0.7 0.716427
Target:  5'- aGGGCGcuccuccGGUUCCGGGUUCCAcgcacGcUCCg -3'
miRNA:   3'- gUUCGCu------CCGAGGCCCAAGGU-----CuAGG- -5'
21728 3' -56 NC_004812.1 + 32010 0.7 0.717416
Target:  5'- gAGGCGGGGCcgaaccggccgccccCCGGGggcUCCAGGcCCg -3'
miRNA:   3'- gUUCGCUCCGa--------------GGCCCa--AGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 32163 0.7 0.722348
Target:  5'- -cGGCGGGGCgcccccgcgcggaCCGGGUgccUCCGGG-CCa -3'
miRNA:   3'- guUCGCUCCGa------------GGCCCA---AGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 91135 0.7 0.72628
Target:  5'- gGGGCGGGGCcggUCGGGgacgggcggUCCGGGggCCg -3'
miRNA:   3'- gUUCGCUCCGa--GGCCCa--------AGGUCUa-GG- -5'
21728 3' -56 NC_004812.1 + 588 0.7 0.736053
Target:  5'- gCGGGCGcGGCUCCGGuagcgcGgaCCcGAUCCg -3'
miRNA:   3'- -GUUCGCuCCGAGGCC------CaaGGuCUAGG- -5'
21728 3' -56 NC_004812.1 + 49250 0.7 0.736053
Target:  5'- --cGgGGGGCgUCCGGGgccgacUCCGGcgCCg -3'
miRNA:   3'- guuCgCUCCG-AGGCCCa-----AGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 84417 0.7 0.736053
Target:  5'- cCGAGgGGGaagaGCUCgcgcgaaggGGGUUCCGGGUCCg -3'
miRNA:   3'- -GUUCgCUC----CGAGg--------CCCAAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 127660 0.7 0.736053
Target:  5'- gCGGGCGGGGCUCgCGGcGgcggCCAccUCCa -3'
miRNA:   3'- -GUUCGCUCCGAG-GCC-Caa--GGUcuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.