miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 145573 1.11 0.002166
Target:  5'- cCAAGCGAGGCUCCGGGUUCCAGAUCCu -3'
miRNA:   3'- -GUUCGCUCCGAGGCCCAAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 13744 0.8 0.252283
Target:  5'- gUAGGCGGGGCUCUGGGcccUUCGGGUCg -3'
miRNA:   3'- -GUUCGCUCCGAGGCCCa--AGGUCUAGg -5'
21728 3' -56 NC_004812.1 + 4978 0.78 0.325767
Target:  5'- -cGGCGAGGCgggggcgaCGGG-UCCGGGUCCu -3'
miRNA:   3'- guUCGCUCCGag------GCCCaAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 59719 0.77 0.353821
Target:  5'- -cGGCGAGGCgggcccccgggucgUCUGGGUUCCggccGGGUCCc -3'
miRNA:   3'- guUCGCUCCG--------------AGGCCCAAGG----UCUAGG- -5'
21728 3' -56 NC_004812.1 + 130486 0.77 0.35617
Target:  5'- -cGGCGAGGCggggggcgaCGGG-UCCGGGUCCu -3'
miRNA:   3'- guUCGCUCCGag-------GCCCaAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 83255 0.77 0.371294
Target:  5'- gGGGCGAGGCgucggCCGGGgcgCCgcucgccgcacgcGGAUCCa -3'
miRNA:   3'- gUUCGCUCCGa----GGCCCaa-GG-------------UCUAGG- -5'
21728 3' -56 NC_004812.1 + 123565 0.76 0.405391
Target:  5'- gCGAGCGAGGCggcgcggCCGGGcUCgAGucGUCCg -3'
miRNA:   3'- -GUUCGCUCCGa------GGCCCaAGgUC--UAGG- -5'
21728 3' -56 NC_004812.1 + 154466 0.76 0.405391
Target:  5'- gCGAGCGAGGCggcgcggCCGGGcUCgAGucGUCCg -3'
miRNA:   3'- -GUUCGCUCCGa------GGCCCaAGgUC--UAGG- -5'
21728 3' -56 NC_004812.1 + 78551 0.76 0.422724
Target:  5'- gCAAG-GGGGCUCCGGGggCUggcGAUCCc -3'
miRNA:   3'- -GUUCgCUCCGAGGCCCaaGGu--CUAGG- -5'
21728 3' -56 NC_004812.1 + 98494 0.75 0.440494
Target:  5'- uGGGUGGGGCggcgCgGGGcgCCGGGUCCc -3'
miRNA:   3'- gUUCGCUCCGa---GgCCCaaGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 154728 0.75 0.458681
Target:  5'- gCGGGCGGGGC-CCGGGcgCCcGggCCa -3'
miRNA:   3'- -GUUCGCUCCGaGGCCCaaGGuCuaGG- -5'
21728 3' -56 NC_004812.1 + 123827 0.75 0.458682
Target:  5'- gCGGGCGGGGC-CCGGGcgCCcGggCCa -3'
miRNA:   3'- -GUUCGCUCCGaGGCCCaaGGuCuaGG- -5'
21728 3' -56 NC_004812.1 + 29794 0.75 0.477261
Target:  5'- -cGGCGGGGC-CCGGGggUCGGcgCCc -3'
miRNA:   3'- guUCGCUCCGaGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 62896 0.75 0.477261
Target:  5'- gGAGCccGGCUCCGGGUcaaCCGGA-CCg -3'
miRNA:   3'- gUUCGcuCCGAGGCCCAa--GGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 155302 0.75 0.477262
Target:  5'- -cGGCGGGGC-CCGGGggUCGGcgCCc -3'
miRNA:   3'- guUCGCUCCGaGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 147548 0.74 0.48669
Target:  5'- aCGGGCGgcGGGUUCCGGGUgCCGGcgCg -3'
miRNA:   3'- -GUUCGC--UCCGAGGCCCAaGGUCuaGg -5'
21728 3' -56 NC_004812.1 + 28357 0.73 0.535056
Target:  5'- gAAGCGGGGgUCCuGGGUUCCGacgCCc -3'
miRNA:   3'- gUUCGCUCCgAGG-CCCAAGGUcuaGG- -5'
21728 3' -56 NC_004812.1 + 30873 0.73 0.544941
Target:  5'- aGAGCGGGGC-CgCGGGggCCGGggCUg -3'
miRNA:   3'- gUUCGCUCCGaG-GCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 156381 0.73 0.544941
Target:  5'- aGAGCGGGGC-CgCGGGggCCGGggCUg -3'
miRNA:   3'- gUUCGCUCCGaG-GCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 37273 0.73 0.586015
Target:  5'- uGGGCGGGGUgcagCGGGUgggccguguccgucgCCGGAUCCg -3'
miRNA:   3'- gUUCGCUCCGag--GCCCAa--------------GGUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.