miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 32010 0.7 0.717416
Target:  5'- gAGGCGGGGCcgaaccggccgccccCCGGGggcUCCAGGcCCg -3'
miRNA:   3'- gUUCGCUCCGa--------------GGCCCa--AGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 5067 0.72 0.625601
Target:  5'- cCGGGCGGGaGaCUCgGGGggCCGgGGUCCg -3'
miRNA:   3'- -GUUCGCUC-C-GAGgCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 92501 0.71 0.666273
Target:  5'- gAGGCGGcGGC-CCGGcUUCCGgGGUCCg -3'
miRNA:   3'- gUUCGCU-CCGaGGCCcAAGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 19092 0.71 0.676393
Target:  5'- cCGAGCGcucGGGCUCCGGccgcGggCCAGGcCCc -3'
miRNA:   3'- -GUUCGC---UCCGAGGCC----CaaGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 98052 0.71 0.686477
Target:  5'- uCGGGCGccGGCUCgGGGgcggCCGGAgCCg -3'
miRNA:   3'- -GUUCGCu-CCGAGgCCCaa--GGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 147811 0.71 0.696517
Target:  5'- -uGGCGAGGCUCgCGuGGUUCCcucgguacgcgGGGUUg -3'
miRNA:   3'- guUCGCUCCGAG-GC-CCAAGG-----------UCUAGg -5'
21728 3' -56 NC_004812.1 + 97997 0.71 0.696517
Target:  5'- gAGGCacgGGGGCU-CGGGcucgaggUCCGGGUCCg -3'
miRNA:   3'- gUUCG---CUCCGAgGCCCa------AGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 154802 0.7 0.716427
Target:  5'- gAGGCGAGGCgcgcagCCGGGgcCC-GAUgCa -3'
miRNA:   3'- gUUCGCUCCGa-----GGCCCaaGGuCUAgG- -5'
21728 3' -56 NC_004812.1 + 135382 0.7 0.716427
Target:  5'- aGGGCGcuccuccGGUUCCGGGUUCCAcgcacGcUCCg -3'
miRNA:   3'- gUUCGCu------CCGAGGCCCAAGGU-----CuAGG- -5'
21728 3' -56 NC_004812.1 + 37273 0.73 0.586015
Target:  5'- uGGGCGGGGUgcagCGGGUgggccguguccgucgCCGGAUCCg -3'
miRNA:   3'- gUUCGCUCCGag--GCCCAa--------------GGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 156381 0.73 0.544941
Target:  5'- aGAGCGGGGC-CgCGGGggCCGGggCUg -3'
miRNA:   3'- gUUCGCUCCGaG-GCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 28357 0.73 0.535056
Target:  5'- gAAGCGGGGgUCCuGGGUUCCGacgCCc -3'
miRNA:   3'- gUUCGCUCCgAGG-CCCAAGGUcuaGG- -5'
21728 3' -56 NC_004812.1 + 130486 0.77 0.35617
Target:  5'- -cGGCGAGGCggggggcgaCGGG-UCCGGGUCCu -3'
miRNA:   3'- guUCGCUCCGag-------GCCCaAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 83255 0.77 0.371294
Target:  5'- gGGGCGAGGCgucggCCGGGgcgCCgcucgccgcacgcGGAUCCa -3'
miRNA:   3'- gUUCGCUCCGa----GGCCCaa-GG-------------UCUAGG- -5'
21728 3' -56 NC_004812.1 + 123565 0.76 0.405391
Target:  5'- gCGAGCGAGGCggcgcggCCGGGcUCgAGucGUCCg -3'
miRNA:   3'- -GUUCGCUCCGa------GGCCCaAGgUC--UAGG- -5'
21728 3' -56 NC_004812.1 + 78551 0.76 0.422724
Target:  5'- gCAAG-GGGGCUCCGGGggCUggcGAUCCc -3'
miRNA:   3'- -GUUCgCUCCGAGGCCCaaGGu--CUAGG- -5'
21728 3' -56 NC_004812.1 + 98494 0.75 0.440494
Target:  5'- uGGGUGGGGCggcgCgGGGcgCCGGGUCCc -3'
miRNA:   3'- gUUCGCUCCGa---GgCCCaaGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 123827 0.75 0.458682
Target:  5'- gCGGGCGGGGC-CCGGGcgCCcGggCCa -3'
miRNA:   3'- -GUUCGCUCCGaGGCCCaaGGuCuaGG- -5'
21728 3' -56 NC_004812.1 + 155302 0.75 0.477262
Target:  5'- -cGGCGGGGC-CCGGGggUCGGcgCCc -3'
miRNA:   3'- guUCGCUCCGaGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 147548 0.74 0.48669
Target:  5'- aCGGGCGgcGGGUUCCGGGUgCCGGcgCg -3'
miRNA:   3'- -GUUCGC--UCCGAGGCCCAaGGUCuaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.