miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 156107 0.66 0.90761
Target:  5'- -cAGCGGGGa-CCGGGggCCGGGa-- -3'
miRNA:   3'- guUCGCUCCgaGGCCCaaGGUCUagg -5'
21728 3' -56 NC_004812.1 + 83549 0.66 0.90761
Target:  5'- gGAGCGcGGuCUCCGGGaggCCGuGcgCCc -3'
miRNA:   3'- gUUCGCuCC-GAGGCCCaa-GGU-CuaGG- -5'
21728 3' -56 NC_004812.1 + 39860 0.66 0.901405
Target:  5'- gGGGCcgGGGGCUCCGccauGGcgCguGGUCCu -3'
miRNA:   3'- gUUCG--CUCCGAGGC----CCaaGguCUAGG- -5'
21728 3' -56 NC_004812.1 + 93726 0.66 0.90761
Target:  5'- gGAGCcGGGCUCCGcGGcagaCGGggCCg -3'
miRNA:   3'- gUUCGcUCCGAGGC-CCaag-GUCuaGG- -5'
21728 3' -56 NC_004812.1 + 117280 0.66 0.90761
Target:  5'- gCGGGCGGGGgcggcggcCUCCGGuacggCCGGggCCg -3'
miRNA:   3'- -GUUCGCUCC--------GAGGCCcaa--GGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 81427 0.66 0.90761
Target:  5'- -cGGCcauGGCgUCCGGGgcCCAGggCCc -3'
miRNA:   3'- guUCGcu-CCG-AGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 117648 0.66 0.901405
Target:  5'- -cGGCGGGGUcgcgggccggCCGGGcgCCGGGgggugCCg -3'
miRNA:   3'- guUCGCUCCGa---------GGCCCaaGGUCUa----GG- -5'
21728 3' -56 NC_004812.1 + 77391 0.66 0.894969
Target:  5'- cCAGGCGgccAGGUcggCgGGGgccUCCAGGUCUc -3'
miRNA:   3'- -GUUCGC---UCCGa--GgCCCa--AGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 135741 0.66 0.894969
Target:  5'- --cGCGAGGCcgUCCGGGaggggCCAcGAgCCc -3'
miRNA:   3'- guuCGCUCCG--AGGCCCaa---GGU-CUaGG- -5'
21728 3' -56 NC_004812.1 + 106357 0.66 0.902035
Target:  5'- -cGGCGA-GCUCCGGGUggaccucaccuucgcCCGGGUUUc -3'
miRNA:   3'- guUCGCUcCGAGGCCCAa--------------GGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 123506 0.66 0.913583
Target:  5'- cCGGGcCGGGGCUCCaaggccgcgagaGGGcUCCAugGGUUCg -3'
miRNA:   3'- -GUUC-GCUCCGAGG------------CCCaAGGU--CUAGG- -5'
21728 3' -56 NC_004812.1 + 84958 0.66 0.913583
Target:  5'- uGGGgGAGGCguggggCCGGGUguuggaggCCucgacgaugGGGUCCu -3'
miRNA:   3'- gUUCgCUCCGa-----GGCCCAa-------GG---------UCUAGG- -5'
21728 3' -56 NC_004812.1 + 98542 0.66 0.924823
Target:  5'- --cGCGGccucGGCgCCGGGcgCCGGggCCc -3'
miRNA:   3'- guuCGCU----CCGaGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 59194 0.66 0.90761
Target:  5'- gCGGGCaGGGCccgCCGGcGUgcgggUCCAGcgCCa -3'
miRNA:   3'- -GUUCGcUCCGa--GGCC-CA-----AGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 82528 0.66 0.899498
Target:  5'- --cGCGAGGCcCCGGGaggcgccgcccguggCCAGGaagcccUCCa -3'
miRNA:   3'- guuCGCUCCGaGGCCCaa-------------GGUCU------AGG- -5'
21728 3' -56 NC_004812.1 + 69517 0.66 0.90761
Target:  5'- uCGAGacgGAGGCcgCCGGG-UCCGGccgCCc -3'
miRNA:   3'- -GUUCg--CUCCGa-GGCCCaAGGUCua-GG- -5'
21728 3' -56 NC_004812.1 + 8368 0.66 0.913583
Target:  5'- --cGCGucGGCggccgCCGGGgcCCGgGGUCCg -3'
miRNA:   3'- guuCGCu-CCGa----GGCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 50980 0.66 0.913583
Target:  5'- -cGGCGuGGUguuUCCGGGccCCAG-UCCc -3'
miRNA:   3'- guUCGCuCCG---AGGCCCaaGGUCuAGG- -5'
21728 3' -56 NC_004812.1 + 151907 0.66 0.901405
Target:  5'- uGGGCGAcagccgcccggGGCUCUGGGgcgcgCCGGAg-- -3'
miRNA:   3'- gUUCGCU-----------CCGAGGCCCaa---GGUCUagg -5'
21728 3' -56 NC_004812.1 + 129185 0.66 0.90761
Target:  5'- gGGGCGcAGGCUCUG-GUUCUGGAa-- -3'
miRNA:   3'- gUUCGC-UCCGAGGCcCAAGGUCUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.