miRNA display CGI


Results 1 - 20 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 588 0.7 0.736053
Target:  5'- gCGGGCGcGGCUCCGGuagcgcGgaCCcGAUCCg -3'
miRNA:   3'- -GUUCGCuCCGAGGCC------CaaGGuCUAGG- -5'
21728 3' -56 NC_004812.1 + 683 0.68 0.810258
Target:  5'- gAGGgGAGcGCguccCCGGG-UCCGGAgcUCCg -3'
miRNA:   3'- gUUCgCUC-CGa---GGCCCaAGGUCU--AGG- -5'
21728 3' -56 NC_004812.1 + 825 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGguggCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 868 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 920 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 972 0.67 0.859465
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCGgGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 1122 0.68 0.810257
Target:  5'- -cGGCGAGGCagaagCCGGccgCCAGGcUCCc -3'
miRNA:   3'- guUCGCUCCGa----GGCCcaaGGUCU-AGG- -5'
21728 3' -56 NC_004812.1 + 1284 0.66 0.913583
Target:  5'- gCGGGCGGGcGgUCCGaGGgcggUCCGagggcGGUCCg -3'
miRNA:   3'- -GUUCGCUC-CgAGGC-CCa---AGGU-----CUAGG- -5'
21728 3' -56 NC_004812.1 + 1920 0.69 0.764798
Target:  5'- uGGGcCGAGGCUCCGG---CCGGGgcgcUCCg -3'
miRNA:   3'- gUUC-GCUCCGAGGCCcaaGGUCU----AGG- -5'
21728 3' -56 NC_004812.1 + 2151 0.7 0.736053
Target:  5'- gCGGGCGGGGCUCgCGGcGgcggCCAccUCCa -3'
miRNA:   3'- -GUUCGCUCCGAG-GCC-Caa--GGUcuAGG- -5'
21728 3' -56 NC_004812.1 + 3677 0.66 0.90761
Target:  5'- gGGGCGcAGGCUCUG-GUUCUGGAa-- -3'
miRNA:   3'- gUUCGC-UCCGAGGCcCAAGGUCUagg -5'
21728 3' -56 NC_004812.1 + 4978 0.78 0.325767
Target:  5'- -cGGCGAGGCgggggcgaCGGG-UCCGGGUCCu -3'
miRNA:   3'- guUCGCUCCGag------GCCCaAGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 5067 0.72 0.625601
Target:  5'- cCGGGCGGGaGaCUCgGGGggCCGgGGUCCg -3'
miRNA:   3'- -GUUCGCUC-C-GAGgCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 5619 0.67 0.866994
Target:  5'- gGGGCcgGAGGCggcUCGGGggCCGGGcCCg -3'
miRNA:   3'- gUUCG--CUCCGa--GGCCCaaGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 8368 0.66 0.913583
Target:  5'- --cGCGucGGCggccgCCGGGgcCCGgGGUCCg -3'
miRNA:   3'- guuCGCu-CCGa----GGCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 8455 0.67 0.874314
Target:  5'- gGAGCGcucggcGGGC-CCGGGUacgCCAGAg-- -3'
miRNA:   3'- gUUCGC------UCCGaGGCCCAa--GGUCUagg -5'
21728 3' -56 NC_004812.1 + 9006 0.7 0.736053
Target:  5'- cCAAGCuGAGGCcCCGGG--CCAGcAUUCa -3'
miRNA:   3'- -GUUCG-CUCCGaGGCCCaaGGUC-UAGG- -5'
21728 3' -56 NC_004812.1 + 11308 0.66 0.924823
Target:  5'- --cGCGGGGCgCCGcGGggCgGGggCCg -3'
miRNA:   3'- guuCGCUCCGaGGC-CCaaGgUCuaGG- -5'
21728 3' -56 NC_004812.1 + 11933 0.69 0.774158
Target:  5'- -cGGCGGGGCggggguggCGGGUUCCuccGUCCc -3'
miRNA:   3'- guUCGCUCCGag------GCCCAAGGuc-UAGG- -5'
21728 3' -56 NC_004812.1 + 11985 0.72 0.59512
Target:  5'- gGGGCGGGGUUCCgccggcGGGcUCCGGucUCCg -3'
miRNA:   3'- gUUCGCUCCGAGG------CCCaAGGUCu-AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.