miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 26311 0.66 0.437546
Target:  5'- cGGGGGUcgGCGGGguucgcggccgcucGGGgGUCCCgggggugGCCGg- -3'
miRNA:   3'- -CCCCCG--CGCCU--------------CCCgCAGGG-------CGGCag -5'
21731 3' -67 NC_004812.1 + 105641 0.66 0.45261
Target:  5'- aGGGaGGcCGCGGAGgcuGGCGUCCagaggggacgggcgGCCG-Cg -3'
miRNA:   3'- -CCC-CC-GCGCCUC---CCGCAGGg-------------CGGCaG- -5'
21731 3' -67 NC_004812.1 + 59652 0.66 0.449238
Target:  5'- aGGGuGGUGUGGGcgcaGGCGUgCCG-CGUCu -3'
miRNA:   3'- -CCC-CCGCGCCUc---CCGCAgGGCgGCAG- -5'
21731 3' -67 NC_004812.1 + 151561 0.66 0.440869
Target:  5'- cGGGGGCGCGGcgcccucGcGCGcCCCcggcccgggGUCGUCg -3'
miRNA:   3'- -CCCCCGCGCCuc-----C-CGCaGGG---------CGGCAG- -5'
21731 3' -67 NC_004812.1 + 121881 0.66 0.432589
Target:  5'- aGGGGCGgGGccuGGGGCGgggCCgcagGCCGg- -3'
miRNA:   3'- cCCCCGCgCC---UCCCGCa--GGg---CGGCag -5'
21731 3' -67 NC_004812.1 + 1322 0.66 0.440869
Target:  5'- cGGGcGGUccGCGGGcgguccgcGGGCGgUCCGCCGg- -3'
miRNA:   3'- -CCC-CCG--CGCCU--------CCCGCaGGGCGGCag -5'
21731 3' -67 NC_004812.1 + 96467 0.66 0.440037
Target:  5'- uGGGGGCcgacccggcccccGCGGAGGaCGcCgCCGCCa-- -3'
miRNA:   3'- -CCCCCG-------------CGCCUCCcGCaG-GGCGGcag -5'
21731 3' -67 NC_004812.1 + 135901 0.66 0.435063
Target:  5'- cGGGGGCGCGGcucgcagAGggaccggaagcaggcGGCGgcgUCCGCCa-- -3'
miRNA:   3'- -CCCCCGCGCC-------UC---------------CCGCa--GGGCGGcag -5'
21731 3' -67 NC_004812.1 + 122227 0.66 0.440869
Target:  5'- gGGcGGGCGCGGGGGGC-UCggCGgCGg- -3'
miRNA:   3'- -CC-CCCGCGCCUCCCGcAGg-GCgGCag -5'
21731 3' -67 NC_004812.1 + 73190 0.66 0.440869
Target:  5'- -aGGGCGUGGGcGGGCGgggCCgGgaCGUCc -3'
miRNA:   3'- ccCCCGCGCCU-CCCGCa--GGgCg-GCAG- -5'
21731 3' -67 NC_004812.1 + 76543 0.66 0.474857
Target:  5'- cGGGGCGUGGAcgcGGGCc-UCgGCCGg- -3'
miRNA:   3'- cCCCCGCGCCU---CCCGcaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 111983 0.66 0.446718
Target:  5'- aGGGGccgcggccccccaaGCGCGGGGGGCuGgcggggaUCUGCgGUCg -3'
miRNA:   3'- -CCCC--------------CGCGCCUCCCG-Ca------GGGCGgCAG- -5'
21731 3' -67 NC_004812.1 + 105503 0.66 0.432589
Target:  5'- -cGGGCccgGCGGccgaguGGGUGUgCgGCCGUCa -3'
miRNA:   3'- ccCCCG---CGCCu-----CCCGCAgGgCGGCAG- -5'
21731 3' -67 NC_004812.1 + 129091 0.66 0.449238
Target:  5'- cGGcGGCgGCGGcGGGCGggCgCGCCGg- -3'
miRNA:   3'- cCC-CCG-CGCCuCCCGCa-GgGCGGCag -5'
21731 3' -67 NC_004812.1 + 126814 0.66 0.440869
Target:  5'- cGGGGCGCcGAcccccGGGC--CCCGCCG-Cg -3'
miRNA:   3'- cCCCCGCGcCU-----CCCGcaGGGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 117676 0.66 0.449238
Target:  5'- gGGGGGUgccgGCGGAGGcCGgCCCGCg--- -3'
miRNA:   3'- -CCCCCG----CGCCUCCcGCaGGGCGgcag -5'
21731 3' -67 NC_004812.1 + 125173 0.66 0.43589
Target:  5'- cGGGaGGCG-GGAGGGCccgggcgcgcgggCCCGCCc-- -3'
miRNA:   3'- -CCC-CCGCgCCUCCCGca-----------GGGCGGcag -5'
21731 3' -67 NC_004812.1 + 6021 0.66 0.432589
Target:  5'- aGGGGGaCGCGGGcaGCGacugCgCGCCGUa -3'
miRNA:   3'- -CCCCC-GCGCCUccCGCa---GgGCGGCAg -5'
21731 3' -67 NC_004812.1 + 109420 0.66 0.457694
Target:  5'- cGGGuGGCcCGGcGGGCccccgaggCCCGCCGa- -3'
miRNA:   3'- -CCC-CCGcGCCuCCCGca------GGGCGGCag -5'
21731 3' -67 NC_004812.1 + 19900 0.66 0.432589
Target:  5'- cGGGGGaCGCGGc-GGCccgCgCCGCCGcCa -3'
miRNA:   3'- -CCCCC-GCGCCucCCGca-G-GGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.