miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 55 0.69 0.294143
Target:  5'- gGGGGGCGCGuuuGGGCGggcUCCCGggcgggcucCCGg- -3'
miRNA:   3'- -CCCCCGCGCcu-CCCGC---AGGGC---------GGCag -5'
21731 3' -67 NC_004812.1 + 103 0.7 0.263963
Target:  5'- cGGGGcGCGCGcGGGGcCGggagCCCGCCc-- -3'
miRNA:   3'- -CCCC-CGCGCcUCCC-GCa---GGGCGGcag -5'
21731 3' -67 NC_004812.1 + 673 0.71 0.239527
Target:  5'- cGGGcGGCGCGaGGGGagcGCGUCCCcggguccggagcuCCGUCg -3'
miRNA:   3'- -CCC-CCGCGC-CUCC---CGCAGGGc------------GGCAG- -5'
21731 3' -67 NC_004812.1 + 743 0.67 0.400401
Target:  5'- cGGGGGUGgGGGcGGcGCGaCCCucuuccCCGUCu -3'
miRNA:   3'- -CCCCCGCgCCU-CC-CGCaGGGc-----GGCAG- -5'
21731 3' -67 NC_004812.1 + 1129 0.68 0.368295
Target:  5'- cGGGGCccaucgcaucucCGGAGcuccuuGCGUCCuCGCCGUCu -3'
miRNA:   3'- cCCCCGc-----------GCCUCc-----CGCAGG-GCGGCAG- -5'
21731 3' -67 NC_004812.1 + 1216 0.67 0.416305
Target:  5'- cGGGGGCgGCGccgcGGGGGCuccucCCCGCCc-- -3'
miRNA:   3'- -CCCCCG-CGC----CUCCCGca---GGGCGGcag -5'
21731 3' -67 NC_004812.1 + 1306 0.66 0.440869
Target:  5'- cGGGGCGCcGAcccccGGGC--CCCGCCG-Cg -3'
miRNA:   3'- cCCCCGCGcCU-----CCCGcaGGGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 1322 0.66 0.440869
Target:  5'- cGGGcGGUccGCGGGcgguccgcGGGCGgUCCGCCGg- -3'
miRNA:   3'- -CCC-CCG--CGCCU--------CCCGCaGGGCGGCag -5'
21731 3' -67 NC_004812.1 + 1485 0.66 0.457694
Target:  5'- cGGcGGGCgGCGGcGGaGCG-CCgGCCGg- -3'
miRNA:   3'- -CC-CCCG-CGCCuCC-CGCaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 1982 0.74 0.135695
Target:  5'- aGGGGGgGaGGGGuGGCGggUCCCGCCGg- -3'
miRNA:   3'- -CCCCCgCgCCUC-CCGC--AGGGCGGCag -5'
21731 3' -67 NC_004812.1 + 2054 0.77 0.081642
Target:  5'- gGGGGGCGCGGgggagGGGGCGcgcccCCCG-CGUCu -3'
miRNA:   3'- -CCCCCGCGCC-----UCCCGCa----GGGCgGCAG- -5'
21731 3' -67 NC_004812.1 + 2332 0.76 0.109356
Target:  5'- cGGGGGUcuccGCGGAGGacggggggcGCGUcCCCGCCGg- -3'
miRNA:   3'- -CCCCCG----CGCCUCC---------CGCA-GGGCGGCag -5'
21731 3' -67 NC_004812.1 + 2812 0.67 0.400401
Target:  5'- uGGcGGCGCGcGAcGGCGggCCCGUCGg- -3'
miRNA:   3'- cCC-CCGCGC-CUcCCGCa-GGGCGGCag -5'
21731 3' -67 NC_004812.1 + 3101 0.67 0.377286
Target:  5'- cGGGGCG-GGGGaGGCGccgccgagcUCCuCGCCGg- -3'
miRNA:   3'- cCCCCGCgCCUC-CCGC---------AGG-GCGGCag -5'
21731 3' -67 NC_004812.1 + 3120 0.72 0.206445
Target:  5'- aGGGaguGGUGgGGAGGGUGUCgcggCCGCCG-Cg -3'
miRNA:   3'- -CCC---CCGCgCCUCCCGCAG----GGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 3393 0.72 0.192758
Target:  5'- aGGGcGGCgGCGGAGGGCG-CCgGCgUGUg -3'
miRNA:   3'- -CCC-CCG-CGCCUCCCGCaGGgCG-GCAg -5'
21731 3' -67 NC_004812.1 + 3456 0.74 0.152744
Target:  5'- cGGGGGuCGggccCGGcGGGCgGUCgCGCCGUCa -3'
miRNA:   3'- -CCCCC-GC----GCCuCCCG-CAGgGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 3583 0.66 0.449238
Target:  5'- cGGcGGCgGCGGcGGGCGggCgCGCCGg- -3'
miRNA:   3'- cCC-CCG-CGCCuCCCGCa-GgGCGGCag -5'
21731 3' -67 NC_004812.1 + 4044 0.66 0.474857
Target:  5'- cGGcGGCgGCGGccgcGGCGUCgUCGUCGUCg -3'
miRNA:   3'- cCC-CCG-CGCCuc--CCGCAG-GGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 4233 0.74 0.138629
Target:  5'- cGGGGGCgGCGGcggcggcGGcGGCGgcgCCCGCCG-Cg -3'
miRNA:   3'- -CCCCCG-CGCC-------UC-CCGCa--GGGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.