miRNA display CGI


Results 1 - 20 of 459 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 67015 0.76 0.10419
Target:  5'- cGGGGC-CGGccgcccgcagcAGGGCGgcgaaccgCCCGCCGUCg -3'
miRNA:   3'- cCCCCGcGCC-----------UCCCGCa-------GGGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 133926 0.77 0.081642
Target:  5'- gGGGGGaCGCGGgguccgcucGGGGC-UCCCGCCGg- -3'
miRNA:   3'- -CCCCC-GCGCC---------UCCCGcAGGGCGGCag -5'
21731 3' -67 NC_004812.1 + 109458 0.77 0.087867
Target:  5'- aGGGcGGCGCGG-GGGCG-CCCGCgGg- -3'
miRNA:   3'- -CCC-CCGCGCCuCCCGCaGGGCGgCag -5'
21731 3' -67 NC_004812.1 + 15742 0.77 0.090041
Target:  5'- aGGGGcCGCGGGGGcCGcCCgCGCCGUCa -3'
miRNA:   3'- cCCCC-GCGCCUCCcGCaGG-GCGGCAG- -5'
21731 3' -67 NC_004812.1 + 77962 0.77 0.090041
Target:  5'- cGGGGGCGaaGAGGGUGUCCgGgCCGg- -3'
miRNA:   3'- -CCCCCGCgcCUCCCGCAGGgC-GGCag -5'
21731 3' -67 NC_004812.1 + 132550 0.77 0.090041
Target:  5'- cGGGGaCGCgaGGGGcGGCGUCCC-CCGUCg -3'
miRNA:   3'- cCCCC-GCG--CCUC-CCGCAGGGcGGCAG- -5'
21731 3' -67 NC_004812.1 + 90502 0.76 0.096872
Target:  5'- gGGaGGGCGCGGggagGGGGCGUCCgGUcacuCGUCc -3'
miRNA:   3'- -CC-CCCGCGCC----UCCCGCAGGgCG----GCAG- -5'
21731 3' -67 NC_004812.1 + 72482 0.76 0.100225
Target:  5'- gGGGGGCGgcggcgccucgggguCGGGGGGCG-CgCCGCCGcCg -3'
miRNA:   3'- -CCCCCGC---------------GCCUCCCGCaG-GGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 74356 0.76 0.101695
Target:  5'- aGGGGCGCGGGcgcGGGCGgcggggUCCCGCCc-- -3'
miRNA:   3'- cCCCCGCGCCU---CCCGC------AGGGCGGcag -5'
21731 3' -67 NC_004812.1 + 127563 0.77 0.081642
Target:  5'- gGGGGGCGCGGgggagGGGGCGcgcccCCCG-CGUCu -3'
miRNA:   3'- -CCCCCGCGCC-----UCCCGCa----GGGCgGCAG- -5'
21731 3' -67 NC_004812.1 + 53333 0.78 0.079662
Target:  5'- gGGGGGUcgGCGGAGGGCuucgggGUCgCCGCCG-Cg -3'
miRNA:   3'- -CCCCCG--CGCCUCCCG------CAG-GGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 49239 0.78 0.077157
Target:  5'- aGGcgaucGCGCGGGGGGCGUCCggggccgacuccggCGCCGUCa -3'
miRNA:   3'- cCCc----CGCGCCUCCCGCAGG--------------GCGGCAG- -5'
21731 3' -67 NC_004812.1 + 133064 0.86 0.019589
Target:  5'- gGGcGGGCGCGGGGGGCgGUCCCGCCc-- -3'
miRNA:   3'- -CC-CCCGCGCCUCCCG-CAGGGCGGcag -5'
21731 3' -67 NC_004812.1 + 72354 0.84 0.029363
Target:  5'- aGGGGGgGCGGGGGGUcUCCCGCguCGUCg -3'
miRNA:   3'- -CCCCCgCGCCUCCCGcAGGGCG--GCAG- -5'
21731 3' -67 NC_004812.1 + 130554 0.83 0.03065
Target:  5'- cGGGGGCGCGcGAGGGCGccgcgCCCccggccccggccccGCCGUCg -3'
miRNA:   3'- -CCCCCGCGC-CUCCCGCa----GGG--------------CGGCAG- -5'
21731 3' -67 NC_004812.1 + 21184 0.82 0.037676
Target:  5'- -uGGGCGCGGAGGGCGUCCaggugcgCGCCG-Cg -3'
miRNA:   3'- ccCCCGCGCCUCCCGCAGG-------GCGGCaG- -5'
21731 3' -67 NC_004812.1 + 124321 0.79 0.060713
Target:  5'- aGGGGGCGCGGcgcGGGGCGg---GCCGUCg -3'
miRNA:   3'- -CCCCCGCGCC---UCCCGCagggCGGCAG- -5'
21731 3' -67 NC_004812.1 + 91083 0.79 0.065399
Target:  5'- cGGGGGCGagGGGGGGCGccaggggCgCGCCGUCc -3'
miRNA:   3'- -CCCCCGCg-CCUCCCGCa------GgGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 8397 0.78 0.07584
Target:  5'- cGGGGGCGCGGcgGGGGCucgGcCCCGgCCGUa -3'
miRNA:   3'- -CCCCCGCGCC--UCCCG---CaGGGC-GGCAg -5'
21731 3' -67 NC_004812.1 + 131015 0.78 0.07584
Target:  5'- cGGcGGcCGCGGGGaaGGCGUcCCCGCCGUCc -3'
miRNA:   3'- cCC-CC-GCGCCUC--CCGCA-GGGCGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.