miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 5' -54.3 NC_004812.1 + 147943 1.09 0.004147
Target:  5'- gUUGGCGGUAGAUCCUCAUCUCCACGCc -3'
miRNA:   3'- -AACCGCCAUCUAGGAGUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 2252 0.77 0.418123
Target:  5'- -cGGCGGcgGGGUCCgCGUCggcgUCCGCGCg -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUAG----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 127760 0.77 0.418123
Target:  5'- -cGGCGGcgGGGUCCgCGUCggcgUCCGCGCg -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUAG----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 109182 0.75 0.522582
Target:  5'- -aGGCGGUGGAgagguUCUUCAgccacgUCCGCGCg -3'
miRNA:   3'- aaCCGCCAUCU-----AGGAGUag----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 79821 0.74 0.552872
Target:  5'- --cGCGGUAGAgUCC-CAUCcCCGCGCg -3'
miRNA:   3'- aacCGCCAUCU-AGGaGUAGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 13298 0.73 0.604387
Target:  5'- -cGGCGGggcGUCCgCGUCUCCGcCGCg -3'
miRNA:   3'- aaCCGCCaucUAGGaGUAGAGGU-GCG- -5'
21731 5' -54.3 NC_004812.1 + 94269 0.73 0.614784
Target:  5'- -cGGCGGggcGUCCUCGUCgagCGCGCg -3'
miRNA:   3'- aaCCGCCaucUAGGAGUAGag-GUGCG- -5'
21731 5' -54.3 NC_004812.1 + 41960 0.73 0.631444
Target:  5'- gUGGCGGgccgcaccgacGUCCUCAUCacgggccagcguUCCGCGCg -3'
miRNA:   3'- aACCGCCauc--------UAGGAGUAG------------AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 98220 0.72 0.666805
Target:  5'- -aGGCGGcGGccgCCUgGUCUCCGCGg -3'
miRNA:   3'- aaCCGCCaUCua-GGAgUAGAGGUGCg -5'
21731 5' -54.3 NC_004812.1 + 101614 0.71 0.728157
Target:  5'- -gGGCGGagUGGAcggaCUCGUC-CCACGCg -3'
miRNA:   3'- aaCCGCC--AUCUag--GAGUAGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 129680 0.71 0.728157
Target:  5'- cUGGCGGUGGA-CCUCua---CGCGCu -3'
miRNA:   3'- aACCGCCAUCUaGGAGuagagGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 94329 0.71 0.728157
Target:  5'- -cGGCGGU-GA-CCgcguggGUCUCCGCGCg -3'
miRNA:   3'- aaCCGCCAuCUaGGag----UAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 103632 0.71 0.738138
Target:  5'- -cGGCGGUAGcucUCCUCGcgggcgcggagCUCgGCGCg -3'
miRNA:   3'- aaCCGCCAUCu--AGGAGUa----------GAGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 22988 0.71 0.748023
Target:  5'- cUGGCGGUGGccgCCUaCGUCgucgUCgGCGCg -3'
miRNA:   3'- aACCGCCAUCua-GGA-GUAG----AGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 20060 0.71 0.748023
Target:  5'- -aGGCGGUcgcGGGUCCUCggCggcagCCAgGCc -3'
miRNA:   3'- aaCCGCCA---UCUAGGAGuaGa----GGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 57581 0.71 0.748023
Target:  5'- -aGGCGGUGuc-CCUCGUCcaucaCCACGCc -3'
miRNA:   3'- aaCCGCCAUcuaGGAGUAGa----GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 67380 0.7 0.777008
Target:  5'- gUGGCGGcgcGggCCUCcgCcgCCGCGCg -3'
miRNA:   3'- aACCGCCau-CuaGGAGuaGa-GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 131031 0.7 0.786414
Target:  5'- -aGGCGGggcGGcgCUUCGUCUUC-CGCg -3'
miRNA:   3'- aaCCGCCa--UCuaGGAGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 72932 0.69 0.831106
Target:  5'- -aGGuCGGUGGc-CCaCGUCUCCACGUc -3'
miRNA:   3'- aaCC-GCCAUCuaGGaGUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 57879 0.69 0.831106
Target:  5'- -gGGCGGgaacgCCaUCAUCUCCuCGCu -3'
miRNA:   3'- aaCCGCCaucuaGG-AGUAGAGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.