miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 5' -54.3 NC_004812.1 + 2252 0.77 0.418123
Target:  5'- -cGGCGGcgGGGUCCgCGUCggcgUCCGCGCg -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUAG----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 10801 0.66 0.939048
Target:  5'- -cGGCGGgg---CCgcaCGUCUCCGCGa -3'
miRNA:   3'- aaCCGCCaucuaGGa--GUAGAGGUGCg -5'
21731 5' -54.3 NC_004812.1 + 13298 0.73 0.604387
Target:  5'- -cGGCGGggcGUCCgCGUCUCCGcCGCg -3'
miRNA:   3'- aaCCGCCaucUAGGaGUAGAGGU-GCG- -5'
21731 5' -54.3 NC_004812.1 + 15903 0.69 0.855742
Target:  5'- -aGGCGGgGGGgcaCCUCAUCgacucggCCGCGg -3'
miRNA:   3'- aaCCGCCaUCUa--GGAGUAGa------GGUGCg -5'
21731 5' -54.3 NC_004812.1 + 17271 0.69 0.831106
Target:  5'- -gGGUGGUuuuGGAacCCUCGcccgcgucgcUCUCCGCGCc -3'
miRNA:   3'- aaCCGCCA---UCUa-GGAGU----------AGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 19858 0.66 0.948215
Target:  5'- -aGGCGGUcc-UCUUCGUC-CCGgGCg -3'
miRNA:   3'- aaCCGCCAucuAGGAGUAGaGGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 20060 0.71 0.748023
Target:  5'- -aGGCGGUcgcGGGUCCUCggCggcagCCAgGCc -3'
miRNA:   3'- aaCCGCCA---UCUAGGAGuaGa----GGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 22988 0.71 0.748023
Target:  5'- cUGGCGGUGGccgCCUaCGUCgucgUCgGCGCg -3'
miRNA:   3'- aACCGCCAUCua-GGA-GUAG----AGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 25073 0.66 0.942832
Target:  5'- -cGGCGGcGGGcUCCUCGaCggggcggcgccgCCGCGCg -3'
miRNA:   3'- aaCCGCCaUCU-AGGAGUaGa-----------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 28143 0.68 0.883515
Target:  5'- -cGGCGcUGGGcgcgcagggcgugcUCCUgcUCUCCACGCg -3'
miRNA:   3'- aaCCGCcAUCU--------------AGGAguAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 39406 0.67 0.928898
Target:  5'- cUGGCGGUgcgugccgacgcGGGUCC-CGUCgagcgCCuCGCc -3'
miRNA:   3'- aACCGCCA------------UCUAGGaGUAGa----GGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 41960 0.73 0.631444
Target:  5'- gUGGCGGgccgcaccgacGUCCUCAUCacgggccagcguUCCGCGCg -3'
miRNA:   3'- aACCGCCauc--------UAGGAGUAG------------AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 49499 0.66 0.943753
Target:  5'- aUUGGCgcuggGGUGGGacggCCUCGUCa-CACGCc -3'
miRNA:   3'- -AACCG-----CCAUCUa---GGAGUAGagGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 55695 0.68 0.871131
Target:  5'- gUGGCGGUGGGcgcgcgCCUgCAcccgcgCUCgGCGCa -3'
miRNA:   3'- aACCGCCAUCUa-----GGA-GUa-----GAGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 57581 0.71 0.748023
Target:  5'- -aGGCGGUGuc-CCUCGUCcaucaCCACGCc -3'
miRNA:   3'- aaCCGCCAUcuaGGAGUAGa----GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 57879 0.69 0.831106
Target:  5'- -gGGCGGgaacgCCaUCAUCUCCuCGCu -3'
miRNA:   3'- aaCCGCCaucuaGG-AGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 59780 0.69 0.839516
Target:  5'- -gGGcCGGUGGGggcggcgcCCUCAccCUCUACGCg -3'
miRNA:   3'- aaCC-GCCAUCUa-------GGAGUa-GAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 62087 0.66 0.948215
Target:  5'- -cGGCGGccccgAGGUCCccCGUCcaccagaaCCGCGCg -3'
miRNA:   3'- aaCCGCCa----UCUAGGa-GUAGa-------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 63748 0.67 0.905633
Target:  5'- -cGGCGcuucuccggAGAUCgUCAggUCCACGCg -3'
miRNA:   3'- aaCCGCca-------UCUAGgAGUagAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 67072 0.68 0.885632
Target:  5'- -aGGCcGUGGAcguccUCCUCGUCgCC-CGCa -3'
miRNA:   3'- aaCCGcCAUCU-----AGGAGUAGaGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.