miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 5' -54.3 NC_004812.1 + 74370 0.66 0.934096
Target:  5'- -gGGCGGcgGGGUCC-CG-C-CCGCGCc -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUaGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 72932 0.69 0.831106
Target:  5'- -aGGuCGGUGGc-CCaCGUCUCCACGUc -3'
miRNA:   3'- aaCC-GCCAUCuaGGaGUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 15903 0.69 0.855742
Target:  5'- -aGGCGGgGGGgcaCCUCAUCgacucggCCGCGg -3'
miRNA:   3'- aaCCGCCaUCUa--GGAGUAGa------GGUGCg -5'
21731 5' -54.3 NC_004812.1 + 80936 0.68 0.863545
Target:  5'- -gGGCGGggGGccGUCCUCG--UCCACGUc -3'
miRNA:   3'- aaCCGCCa-UC--UAGGAGUagAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 124917 0.68 0.878495
Target:  5'- -cGGCGGcgGGGgcggcggCC-CAUCUCC-CGCg -3'
miRNA:   3'- aaCCGCCa-UCUa------GGaGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 153652 0.68 0.883515
Target:  5'- -cGGCGcUGGGcgcgcagggcgugcUCCUgcUCUCCACGCg -3'
miRNA:   3'- aaCCGCcAUCU--------------AGGAguAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 75158 0.67 0.922333
Target:  5'- gUUGGCGaGgcucucggCCUCG-CUCCGCGCc -3'
miRNA:   3'- -AACCGC-Caucua---GGAGUaGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 114328 0.67 0.923452
Target:  5'- -cGGCGG-AGAaCCU-GUUUCUGCGCg -3'
miRNA:   3'- aaCCGCCaUCUaGGAgUAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 39406 0.67 0.928898
Target:  5'- cUGGCGGUgcgugccgacgcGGGUCC-CGUCgagcgCCuCGCc -3'
miRNA:   3'- aACCGCCA------------UCUAGGaGUAGa----GGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 57879 0.69 0.831106
Target:  5'- -gGGCGGgaacgCCaUCAUCUCCuCGCu -3'
miRNA:   3'- aaCCGCCaucuaGG-AGUAGAGGuGCG- -5'
21731 5' -54.3 NC_004812.1 + 67380 0.7 0.777008
Target:  5'- gUGGCGGcgcGggCCUCcgCcgCCGCGCg -3'
miRNA:   3'- aACCGCCau-CuaGGAGuaGa-GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 22988 0.71 0.748023
Target:  5'- cUGGCGGUGGccgCCUaCGUCgucgUCgGCGCg -3'
miRNA:   3'- aACCGCCAUCua-GGA-GUAG----AGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 127760 0.77 0.418123
Target:  5'- -cGGCGGcgGGGUCCgCGUCggcgUCCGCGCg -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUAG----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 109182 0.75 0.522582
Target:  5'- -aGGCGGUGGAgagguUCUUCAgccacgUCCGCGCg -3'
miRNA:   3'- aaCCGCCAUCU-----AGGAGUag----AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 79821 0.74 0.552872
Target:  5'- --cGCGGUAGAgUCC-CAUCcCCGCGCg -3'
miRNA:   3'- aacCGCCAUCU-AGGaGUAGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 41960 0.73 0.631444
Target:  5'- gUGGCGGgccgcaccgacGUCCUCAUCacgggccagcguUCCGCGCg -3'
miRNA:   3'- aACCGCCauc--------UAGGAGUAG------------AGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 94329 0.71 0.728157
Target:  5'- -cGGCGGU-GA-CCgcguggGUCUCCGCGCg -3'
miRNA:   3'- aaCCGCCAuCUaGGag----UAGAGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 101614 0.71 0.728157
Target:  5'- -gGGCGGagUGGAcggaCUCGUC-CCACGCg -3'
miRNA:   3'- aaCCGCC--AUCUag--GAGUAGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 103632 0.71 0.738138
Target:  5'- -cGGCGGUAGcucUCCUCGcgggcgcggagCUCgGCGCg -3'
miRNA:   3'- aaCCGCCAUCu--AGGAGUa----------GAGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 20060 0.71 0.748023
Target:  5'- -aGGCGGUcgcGGGUCCUCggCggcagCCAgGCc -3'
miRNA:   3'- aaCCGCCA---UCUAGGAGuaGa----GGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.