miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 5' -52.1 NC_004812.1 + 90712 0.66 0.988407
Target:  5'- cCACG-GGCCCCUGcgcuUGGggGCGaUGAUGg -3'
miRNA:   3'- -GUGCaCUGGGGAU----ACUagUGC-ACUGC- -5'
21732 5' -52.1 NC_004812.1 + 59388 0.66 0.988407
Target:  5'- gCGCGaGGCCCCacgcagCGCGUGGCa -3'
miRNA:   3'- -GUGCaCUGGGGauacuaGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 11435 0.66 0.988112
Target:  5'- gACGUGACCCCaggcgugCACGUGcCc -3'
miRNA:   3'- gUGCACUGGGGauacua-GUGCACuGc -5'
21732 5' -52.1 NC_004812.1 + 135955 0.66 0.987659
Target:  5'- aACGUGACCgacgggagccugcUCUcgGAggaggcggugcggCGCGUGACGg -3'
miRNA:   3'- gUGCACUGG-------------GGAuaCUa------------GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 134494 0.66 0.986874
Target:  5'- gCGCGUGcCCCCg--GAUCAuCGccaugGACGc -3'
miRNA:   3'- -GUGCACuGGGGauaCUAGU-GCa----CUGC- -5'
21732 5' -52.1 NC_004812.1 + 96655 0.66 0.986874
Target:  5'- cCGCGcGACCCC-GUGGgccagCAgGUGACc -3'
miRNA:   3'- -GUGCaCUGGGGaUACUa----GUgCACUGc -5'
21732 5' -52.1 NC_004812.1 + 83502 0.67 0.976771
Target:  5'- cCGCGUGACCgUUAUGGacCugGUGcugGCGg -3'
miRNA:   3'- -GUGCACUGGgGAUACUa-GugCAC---UGC- -5'
21732 5' -52.1 NC_004812.1 + 94038 0.67 0.976771
Target:  5'- gGCGUGugCCCcGUGcugCGCGUgcucGACGu -3'
miRNA:   3'- gUGCACugGGGaUACua-GUGCA----CUGC- -5'
21732 5' -52.1 NC_004812.1 + 145175 0.67 0.976771
Target:  5'- gCACGUGcACgCCUggGGUCACGUcgucaucagcacGGCGu -3'
miRNA:   3'- -GUGCAC-UGgGGAuaCUAGUGCA------------CUGC- -5'
21732 5' -52.1 NC_004812.1 + 42764 0.67 0.976523
Target:  5'- gGCGUGACCUCUuUGGUgCugGccgugggUGACGu -3'
miRNA:   3'- gUGCACUGGGGAuACUA-GugC-------ACUGC- -5'
21732 5' -52.1 NC_004812.1 + 125973 0.67 0.971437
Target:  5'- uGCGUGACggCCCUGacgggggcgcUGuGUCAgGUGGCGg -3'
miRNA:   3'- gUGCACUG--GGGAU----------AC-UAGUgCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 95058 0.68 0.967529
Target:  5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaggcaacGACa -3'
miRNA:   3'- -GUGCACUGGGgaUACUAGuGCA--------------CUGc -5'
21732 5' -52.1 NC_004812.1 + 23694 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 61555 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 149202 0.68 0.965275
Target:  5'- gACG-GAUCaCCg--GGUCACGUGACu -3'
miRNA:   3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5'
21732 5' -52.1 NC_004812.1 + 111695 0.68 0.961868
Target:  5'- gACGUGGCCgCUGgcGAUCugGgccacgGGCGa -3'
miRNA:   3'- gUGCACUGGgGAUa-CUAGugCa-----CUGC- -5'
21732 5' -52.1 NC_004812.1 + 115072 0.69 0.950274
Target:  5'- gACGagaagcagGACCCCcagGAUCACGUGgGCGu -3'
miRNA:   3'- gUGCa-------CUGGGGauaCUAGUGCAC-UGC- -5'
21732 5' -52.1 NC_004812.1 + 118450 0.69 0.950274
Target:  5'- cCGCG-GGCCCCggcgcgGUGcaggcCACGUGGCGc -3'
miRNA:   3'- -GUGCaCUGGGGa-----UACua---GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 121520 0.69 0.936539
Target:  5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3'
miRNA:   3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5'
21732 5' -52.1 NC_004812.1 + 152421 0.69 0.936539
Target:  5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3'
miRNA:   3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.