miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21749 5' -54 NC_004813.1 + 27622 0.67 0.701944
Target:  5'- aUGUCCGGgaaaaacaaAACAgCG-UCAGCcauUGCCg -3'
miRNA:   3'- -ACAGGCCg--------UUGUgGCaAGUCGu--ACGG- -5'
21749 5' -54 NC_004813.1 + 27304 0.68 0.657979
Target:  5'- -cUCCGGCAGCGUCGggucCGGCAUaCCa -3'
miRNA:   3'- acAGGCCGUUGUGGCaa--GUCGUAcGG- -5'
21749 5' -54 NC_004813.1 + 22931 0.71 0.494603
Target:  5'- cUGaCCGGUGACugCG-UCAGCgugaacgguGUGCCa -3'
miRNA:   3'- -ACaGGCCGUUGugGCaAGUCG---------UACGG- -5'
21749 5' -54 NC_004813.1 + 21981 0.66 0.785799
Target:  5'- -aUCCaGGgAACACCGc-CAGCAgaGCCa -3'
miRNA:   3'- acAGG-CCgUUGUGGCaaGUCGUa-CGG- -5'
21749 5' -54 NC_004813.1 + 21470 0.7 0.5586
Target:  5'- cGcCCGGUGuCACCGUacugCGGCGcGCCa -3'
miRNA:   3'- aCaGGCCGUuGUGGCAa---GUCGUaCGG- -5'
21749 5' -54 NC_004813.1 + 21395 0.75 0.30385
Target:  5'- aGUaCGGUGACACCGggcggugCAGCAUGCa -3'
miRNA:   3'- aCAgGCCGUUGUGGCaa-----GUCGUACGg -5'
21749 5' -54 NC_004813.1 + 19713 0.67 0.732103
Target:  5'- uUGUCUGGUGACAguagcuauaccaCGUUaCAGCGUGUUg -3'
miRNA:   3'- -ACAGGCCGUUGUg-----------GCAA-GUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 17996 0.68 0.669035
Target:  5'- aUGUCCGGCAuccCACUGagCAGaCGUGa- -3'
miRNA:   3'- -ACAGGCCGUu--GUGGCaaGUC-GUACgg -5'
21749 5' -54 NC_004813.1 + 14789 0.71 0.474002
Target:  5'- -uUCCGGCGccaGCCGUUgAcCAUGCCa -3'
miRNA:   3'- acAGGCCGUug-UGGCAAgUcGUACGG- -5'
21749 5' -54 NC_004813.1 + 14758 0.66 0.805372
Target:  5'- --aCCugacGCGaaACAUCGUUCAGCAUcgGCCa -3'
miRNA:   3'- acaGGc---CGU--UGUGGCAAGUCGUA--CGG- -5'
21749 5' -54 NC_004813.1 + 5695 0.66 0.805372
Target:  5'- aUGUUaCGGCAuaaaGCCaugaUUCAGUGUGCCc -3'
miRNA:   3'- -ACAG-GCCGUug--UGGc---AAGUCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.