miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21751 5' -54.1 NC_004813.1 + 31388 0.66 0.779182
Target:  5'- ----gGUUACCGcuugaGGCCGUGCCCUuCACa -3'
miRNA:   3'- auuggCAGUGGU-----UUGGCGUGGGA-GUG- -5'
21751 5' -54.1 NC_004813.1 + 49087 0.66 0.779182
Target:  5'- --cCCGUCACCAAACCugACCUgCAa -3'
miRNA:   3'- auuGGCAGUGGUUUGGcgUGGGaGUg -5'
21751 5' -54.1 NC_004813.1 + 15841 0.66 0.779182
Target:  5'- -uGCUGUCAUUuuuGCCGCGCgugCCUUACc -3'
miRNA:   3'- auUGGCAGUGGuu-UGGCGUG---GGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 41805 0.66 0.768972
Target:  5'- aGGCCGUCAU--GGCCGUcaGCUCUgACa -3'
miRNA:   3'- aUUGGCAGUGguUUGGCG--UGGGAgUG- -5'
21751 5' -54.1 NC_004813.1 + 20751 0.66 0.768972
Target:  5'- aGGCCGaacUCACCGGGagGCACCCggCAUc -3'
miRNA:   3'- aUUGGC---AGUGGUUUggCGUGGGa-GUG- -5'
21751 5' -54.1 NC_004813.1 + 35308 0.66 0.748127
Target:  5'- --uCCG-CACCGGACUGCAUCCg--- -3'
miRNA:   3'- auuGGCaGUGGUUUGGCGUGGGagug -5'
21751 5' -54.1 NC_004813.1 + 35760 0.66 0.737517
Target:  5'- gGACCGUgaauaUGCC--ACCGCACCCguuugugCGCc -3'
miRNA:   3'- aUUGGCA-----GUGGuuUGGCGUGGGa------GUG- -5'
21751 5' -54.1 NC_004813.1 + 28070 0.66 0.736449
Target:  5'- gAACUG-CGCCAgcuuauaAGCCGCAUCCagCGCc -3'
miRNA:   3'- aUUGGCaGUGGU-------UUGGCGUGGGa-GUG- -5'
21751 5' -54.1 NC_004813.1 + 40888 0.67 0.726797
Target:  5'- aGACCGgggaauaCACCAGAcCCGCACUgccgUUCAUa -3'
miRNA:   3'- aUUGGCa------GUGGUUU-GGCGUGG----GAGUG- -5'
21751 5' -54.1 NC_004813.1 + 37378 0.67 0.705076
Target:  5'- cAACCGggcaugUACCGGACCauagacggccaGCACCUgcUCACg -3'
miRNA:   3'- aUUGGCa-----GUGGUUUGG-----------CGUGGG--AGUG- -5'
21751 5' -54.1 NC_004813.1 + 42518 0.67 0.6941
Target:  5'- cUGACCGUugCGCC--ACCaGuCAUCCUCACg -3'
miRNA:   3'- -AUUGGCA--GUGGuuUGG-C-GUGGGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 40653 0.67 0.683062
Target:  5'- cAGCCaGUCACCAAugcuGCCGagaaAUCCUCccGCa -3'
miRNA:   3'- aUUGG-CAGUGGUU----UGGCg---UGGGAG--UG- -5'
21751 5' -54.1 NC_004813.1 + 31709 0.67 0.683062
Target:  5'- -uACUGUCGCCGgucggcucaGACUGCAUuuccagugaugCCUCGCg -3'
miRNA:   3'- auUGGCAGUGGU---------UUGGCGUG-----------GGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 15562 0.68 0.660847
Target:  5'- -uGCUGUCGCCucauGCCGC-CCUUCu- -3'
miRNA:   3'- auUGGCAGUGGuu--UGGCGuGGGAGug -5'
21751 5' -54.1 NC_004813.1 + 47734 0.68 0.627344
Target:  5'- -cGCCaGUCGCCAcuGCCGgaGCCUUCAUa -3'
miRNA:   3'- auUGG-CAGUGGUu-UGGCg-UGGGAGUG- -5'
21751 5' -54.1 NC_004813.1 + 52948 0.68 0.627344
Target:  5'- aAGCCGUUGCCGcaggcGACCGCguaaACCgUCAg -3'
miRNA:   3'- aUUGGCAGUGGU-----UUGGCG----UGGgAGUg -5'
21751 5' -54.1 NC_004813.1 + 50111 0.68 0.627344
Target:  5'- aAGCCGUUGCCGcaugcGACCGCguaaACCgUCAg -3'
miRNA:   3'- aUUGGCAGUGGU-----UUGGCG----UGGgAGUg -5'
21751 5' -54.1 NC_004813.1 + 41467 0.68 0.627344
Target:  5'- -uACCGcUCACCGccCUGCACCgUCAg -3'
miRNA:   3'- auUGGC-AGUGGUuuGGCGUGGgAGUg -5'
21751 5' -54.1 NC_004813.1 + 45264 0.69 0.593879
Target:  5'- -uGCCGUCACUgcGCCGuCGCCUguucCGCu -3'
miRNA:   3'- auUGGCAGUGGuuUGGC-GUGGGa---GUG- -5'
21751 5' -54.1 NC_004813.1 + 25106 0.69 0.57172
Target:  5'- -cACCGacaGCCAAACCGgUAUCCUCAa -3'
miRNA:   3'- auUGGCag-UGGUUUGGC-GUGGGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.