miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21771 5' -55.3 NC_004813.1 + 45283 0.66 0.699782
Target:  5'- ---aGGCAGggugcugaccuguauCCGGUCCGGcgcgggguGUGCGGUGa -3'
miRNA:   3'- accaCCGUC---------------GGCUAGGCU--------UAUGCCAC- -5'
21771 5' -55.3 NC_004813.1 + 34591 0.66 0.69438
Target:  5'- cGGUGuGUucagAGCCGGUgaaaccuaccaccCCGGcgAUACGGUGa -3'
miRNA:   3'- aCCAC-CG----UCGGCUA-------------GGCU--UAUGCCAC- -5'
21771 5' -55.3 NC_004813.1 + 28512 0.67 0.688963
Target:  5'- aGGUGGCGGCUaacgccuuuaauccuGcgCgGGAUAUGGUc -3'
miRNA:   3'- aCCACCGUCGG---------------CuaGgCUUAUGCCAc -5'
21771 5' -55.3 NC_004813.1 + 30893 0.67 0.651837
Target:  5'- gUGGgcaGGCAGCCuGUCUGAAUAUcaGGa- -3'
miRNA:   3'- -ACCa--CCGUCGGcUAGGCUUAUG--CCac -5'
21771 5' -55.3 NC_004813.1 + 26207 0.67 0.64086
Target:  5'- cGGUGGCuucacGCaCGGUaCCGGAgcaGGUGg -3'
miRNA:   3'- aCCACCGu----CG-GCUA-GGCUUaugCCAC- -5'
21771 5' -55.3 NC_004813.1 + 21130 0.68 0.618891
Target:  5'- gGGcUGGCAGCCG-UuuGGuaGUcCGGUGg -3'
miRNA:   3'- aCC-ACCGUCGGCuAggCU--UAuGCCAC- -5'
21771 5' -55.3 NC_004813.1 + 41608 0.74 0.285492
Target:  5'- cGGUGGUccgccGCCGGguguaugcgcguuuUCUGGAUGCGGUGa -3'
miRNA:   3'- aCCACCGu----CGGCU--------------AGGCUUAUGCCAC- -5'
21771 5' -55.3 NC_004813.1 + 28640 1.08 0.001236
Target:  5'- gUGGUGGCAGCCGAUCCGAAUACGGUGu -3'
miRNA:   3'- -ACCACCGUCGGCUAGGCUUAUGCCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.