miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21778 3' -51.7 NC_004813.1 + 2655 0.66 0.898225
Target:  5'- uCUGCGcGAgcUACAgGAGCGCCGcaa-GGCu -3'
miRNA:   3'- -GGCGC-CU--AUGU-CUCGUGGCaaagUCG- -5'
21778 3' -51.7 NC_004813.1 + 14298 0.66 0.905133
Target:  5'- aCGCGGAU----AGCAUCGUg-CGGCa -3'
miRNA:   3'- gGCGCCUAugucUCGUGGCAaaGUCG- -5'
21778 3' -51.7 NC_004813.1 + 22384 0.69 0.775783
Target:  5'- gCCaGUGGcgGCAGGGCAgaaGUggUCAGCg -3'
miRNA:   3'- -GG-CGCCuaUGUCUCGUgg-CAa-AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 28264 0.74 0.49345
Target:  5'- aCUGCGGAUuguGGAuGCACCGgg-CAGCc -3'
miRNA:   3'- -GGCGCCUAug-UCU-CGUGGCaaaGUCG- -5'
21778 3' -51.7 NC_004813.1 + 29123 0.68 0.842503
Target:  5'- gUGCGGAUuucugggagcaGCAGGGCAggCGcgUCAGCc -3'
miRNA:   3'- gGCGCCUA-----------UGUCUCGUg-GCaaAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 29990 0.69 0.775783
Target:  5'- -gGCGGAguuugGCAGuGCGcucCCGUUUCucuGGCa -3'
miRNA:   3'- ggCGCCUa----UGUCuCGU---GGCAAAG---UCG- -5'
21778 3' -51.7 NC_004813.1 + 30042 0.8 0.24611
Target:  5'- cCUGUGGGgcagugUACGGuGCGCCGggUCAGCg -3'
miRNA:   3'- -GGCGCCU------AUGUCuCGUGGCaaAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 31335 0.76 0.367031
Target:  5'- aUGCGGAUGCAGAgGCGgCGUUUggacaguuuguugCAGCa -3'
miRNA:   3'- gGCGCCUAUGUCU-CGUgGCAAA-------------GUCG- -5'
21778 3' -51.7 NC_004813.1 + 31698 0.7 0.734065
Target:  5'- gCGUGGccauccGUGCGGAGCGCUGgaUCAacugGCg -3'
miRNA:   3'- gGCGCC------UAUGUCUCGUGGCaaAGU----CG- -5'
21778 3' -51.7 NC_004813.1 + 32605 0.69 0.765553
Target:  5'- gUCGUGGAUcacuucccggGCAG-GCACCGUcaccgccUCAGUg -3'
miRNA:   3'- -GGCGCCUA----------UGUCuCGUGGCAa------AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 32952 0.67 0.851207
Target:  5'- gCCG-GGAcACGGAaCACCGaacagacaaUUUCAGCg -3'
miRNA:   3'- -GGCgCCUaUGUCUcGUGGC---------AAAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 33159 0.67 0.875876
Target:  5'- gCCGCcccuGGccgGCGGugauGCACUGUaucUUCAGCa -3'
miRNA:   3'- -GGCG----CCua-UGUCu---CGUGGCA---AAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 34382 0.68 0.833572
Target:  5'- cCUGCGGAgccgGCAGGGCacucACCGcauccagaaCAGCc -3'
miRNA:   3'- -GGCGCCUa---UGUCUCG----UGGCaaa------GUCG- -5'
21778 3' -51.7 NC_004813.1 + 35200 0.66 0.911763
Target:  5'- aUGCGGAUAUccguggcaGGAGCAgCCGgg--AGCg -3'
miRNA:   3'- gGCGCCUAUG--------UCUCGU-GGCaaagUCG- -5'
21778 3' -51.7 NC_004813.1 + 38772 0.73 0.557676
Target:  5'- gCGCGGGcaaggGCAGccguGUACCGUgcUCAGCa -3'
miRNA:   3'- gGCGCCUa----UGUCu---CGUGGCAa-AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 38885 0.7 0.709268
Target:  5'- cCCGCGGGcugccgccacggccUGCuGAGCACgGUacaCGGCu -3'
miRNA:   3'- -GGCGCCU--------------AUGuCUCGUGgCAaa-GUCG- -5'
21778 3' -51.7 NC_004813.1 + 41055 0.69 0.752045
Target:  5'- aCGCGGGacCAGAuGCAgCGUUuuuaucucagccacUCAGCa -3'
miRNA:   3'- gGCGCCUauGUCU-CGUgGCAA--------------AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 41855 0.68 0.842503
Target:  5'- aCCG-GGAaACAGcGCACCGUccgucucggUCGGUg -3'
miRNA:   3'- -GGCgCCUaUGUCuCGUGGCAa--------AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 44240 0.71 0.657472
Target:  5'- -gGUGGAUGCGGAGCAguuUgGUggcCAGCa -3'
miRNA:   3'- ggCGCCUAUGUCUCGU---GgCAaa-GUCG- -5'
21778 3' -51.7 NC_004813.1 + 44354 0.72 0.61292
Target:  5'- aCCGCGGAUAUGGuAGUucACCGUcaUCuGCu -3'
miRNA:   3'- -GGCGCCUAUGUC-UCG--UGGCAa-AGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.