Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 45368 | 0.66 | 0.911763 |
|
Target: 5'- aUCGUGGAUaACGGuGC-CCGcUUUgAGCc -3' miRNA: 3'- -GGCGCCUA-UGUCuCGuGGC-AAAgUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 45502 | 0.66 | 0.911763 |
|
Target: 5'- gCCGCGGGUGgugaAGGGCgugCGcUUCAGUc -3' miRNA: 3'- -GGCGCCUAUg---UCUCGug-GCaAAGUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 45587 | 1.16 | 0.000978 |
|
Target: 5'- aCCGCGGAUACAGAGCACCGUUUCAGCg -3' miRNA: 3'- -GGCGCCUAUGUCUCGUGGCAAAGUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 46162 | 0.68 | 0.842503 |
|
Target: 5'- aCGCuGGAggacCAGAGCGCCaccauaCAGCa -3' miRNA: 3'- gGCG-CCUau--GUCUCGUGGcaaa--GUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 46529 | 0.7 | 0.734065 |
|
Target: 5'- aCGCGGAUaucaGCGGAGCaauuACCGcgaauacCGGCa -3' miRNA: 3'- gGCGCCUA----UGUCUCG----UGGCaaa----GUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 49798 | 0.66 | 0.918112 |
|
Target: 5'- gCUGCGuGAgcagUACGGGGUcggACCGguaugCAGCg -3' miRNA: 3'- -GGCGC-CU----AUGUCUCG---UGGCaaa--GUCG- -5' |
|||||||
| 21778 | 3' | -51.7 | NC_004813.1 | + | 56418 | 0.7 | 0.701633 |
|
Target: 5'- gUGCGGGUugAGuguGUACCGUUacgcUgAGCa -3' miRNA: 3'- gGCGCCUAugUCu--CGUGGCAA----AgUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home