miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21778 3' -51.7 NC_004813.1 + 30042 0.8 0.24611
Target:  5'- cCUGUGGGgcagugUACGGuGCGCCGggUCAGCg -3'
miRNA:   3'- -GGCGCCU------AUGUCuCGUGGCaaAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 29990 0.69 0.775783
Target:  5'- -gGCGGAguuugGCAGuGCGcucCCGUUUCucuGGCa -3'
miRNA:   3'- ggCGCCUa----UGUCuCGU---GGCAAAG---UCG- -5'
21778 3' -51.7 NC_004813.1 + 29123 0.68 0.842503
Target:  5'- gUGCGGAUuucugggagcaGCAGGGCAggCGcgUCAGCc -3'
miRNA:   3'- gGCGCCUA-----------UGUCUCGUg-GCaaAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 28264 0.74 0.49345
Target:  5'- aCUGCGGAUuguGGAuGCACCGgg-CAGCc -3'
miRNA:   3'- -GGCGCCUAug-UCU-CGUGGCaaaGUCG- -5'
21778 3' -51.7 NC_004813.1 + 22384 0.69 0.775783
Target:  5'- gCCaGUGGcgGCAGGGCAgaaGUggUCAGCg -3'
miRNA:   3'- -GG-CGCCuaUGUCUCGUgg-CAa-AGUCG- -5'
21778 3' -51.7 NC_004813.1 + 14298 0.66 0.905133
Target:  5'- aCGCGGAU----AGCAUCGUg-CGGCa -3'
miRNA:   3'- gGCGCCUAugucUCGUGGCAaaGUCG- -5'
21778 3' -51.7 NC_004813.1 + 2655 0.66 0.898225
Target:  5'- uCUGCGcGAgcUACAgGAGCGCCGcaa-GGCu -3'
miRNA:   3'- -GGCGC-CU--AUGU-CUCGUGGCaaagUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.