miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21778 3' -51.7 NC_004813.1 + 33159 0.67 0.875876
Target:  5'- gCCGCcccuGGccgGCGGugauGCACUGUaucUUCAGCa -3'
miRNA:   3'- -GGCG----CCua-UGUCu---CGUGGCA---AAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 2655 0.66 0.898225
Target:  5'- uCUGCGcGAgcUACAgGAGCGCCGcaa-GGCu -3'
miRNA:   3'- -GGCGC-CU--AUGU-CUCGUGGCaaagUCG- -5'
21778 3' -51.7 NC_004813.1 + 14298 0.66 0.905133
Target:  5'- aCGCGGAU----AGCAUCGUg-CGGCa -3'
miRNA:   3'- gGCGCCUAugucUCGUGGCAaaGUCG- -5'
21778 3' -51.7 NC_004813.1 + 45368 0.66 0.911763
Target:  5'- aUCGUGGAUaACGGuGC-CCGcUUUgAGCc -3'
miRNA:   3'- -GGCGCCUA-UGUCuCGuGGC-AAAgUCG- -5'
21778 3' -51.7 NC_004813.1 + 45502 0.66 0.911763
Target:  5'- gCCGCGGGUGgugaAGGGCgugCGcUUCAGUc -3'
miRNA:   3'- -GGCGCCUAUg---UCUCGug-GCaAAGUCG- -5'
21778 3' -51.7 NC_004813.1 + 35200 0.66 0.911763
Target:  5'- aUGCGGAUAUccguggcaGGAGCAgCCGgg--AGCg -3'
miRNA:   3'- gGCGCCUAUG--------UCUCGU-GGCaaagUCG- -5'
21778 3' -51.7 NC_004813.1 + 49798 0.66 0.918112
Target:  5'- gCUGCGuGAgcagUACGGGGUcggACCGguaugCAGCg -3'
miRNA:   3'- -GGCGC-CU----AUGUCUCG---UGGCaaa--GUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.