miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 2787 0.67 0.923384
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21922 3' -50.5 NC_004913.1 + 2882 0.68 0.889636
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 5983 0.68 0.857683
Target:  5'- gCCACCGAC--CAUUACCGuGC-GUACc -3'
miRNA:   3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5'
21922 3' -50.5 NC_004913.1 + 6045 0.66 0.934868
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 6137 0.7 0.761898
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
21922 3' -50.5 NC_004913.1 + 6292 0.68 0.855977
Target:  5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3'
miRNA:   3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5'
21922 3' -50.5 NC_004913.1 + 6914 0.67 0.910741
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 7886 0.79 0.318999
Target:  5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3'
miRNA:   3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 10199 0.66 0.944707
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 10919 0.78 0.378811
Target:  5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3'
miRNA:   3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 11137 0.67 0.923384
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 11629 0.68 0.874185
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
21922 3' -50.5 NC_004913.1 + 11926 0.69 0.849057
Target:  5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3'
miRNA:   3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5'
21922 3' -50.5 NC_004913.1 + 16488 0.69 0.831098
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
21922 3' -50.5 NC_004913.1 + 17032 0.69 0.812261
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 18611 0.75 0.497297
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
21922 3' -50.5 NC_004913.1 + 19428 0.67 0.902604
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
21922 3' -50.5 NC_004913.1 + 19533 0.68 0.866062
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
21922 3' -50.5 NC_004913.1 + 19583 0.71 0.719026
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 19613 0.67 0.917207
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.