miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 19695 0.71 0.719026
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 20087 0.69 0.849057
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 20335 0.7 0.782546
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21922 3' -50.5 NC_004913.1 + 20600 0.67 0.896953
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
21922 3' -50.5 NC_004913.1 + 20690 0.68 0.882045
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 21481 0.66 0.934868
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 22556 0.71 0.72991
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 24276 0.72 0.652246
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21922 3' -50.5 NC_004913.1 + 26233 0.7 0.782546
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21922 3' -50.5 NC_004913.1 + 26711 1.13 0.001912
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 29010 0.71 0.719026
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21922 3' -50.5 NC_004913.1 + 30694 0.66 0.939658
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 31430 0.67 0.923384
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 35923 0.75 0.507942
Target:  5'- gCCGCCAuACggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGU-UGuuGUAAUGgcCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 51276 0.66 0.949932
Target:  5'- uCCACCcccugaagGACGGCGUUuuaCGGC-GCACc -3'
miRNA:   3'- -GGUGG--------UUGUUGUAAug-GCCGuCGUGc -5'
21922 3' -50.5 NC_004913.1 + 53222 0.7 0.800572
Target:  5'- gCCACCAGCGACcccggguAUUACUuuguugugguucuGGCAGgGCa -3'
miRNA:   3'- -GGUGGUUGUUG-------UAAUGG-------------CCGUCgUGc -5'
21922 3' -50.5 NC_004913.1 + 54825 0.68 0.889636
Target:  5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3'
miRNA:   3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5'
21922 3' -50.5 NC_004913.1 + 54956 0.74 0.540424
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 55045 0.67 0.903989
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 55458 0.66 0.929271
Target:  5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3'
miRNA:   3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.