miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 26233 0.7 0.782546
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21922 3' -50.5 NC_004913.1 + 19695 0.71 0.719026
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 29010 0.71 0.719026
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21922 3' -50.5 NC_004913.1 + 19583 0.71 0.719026
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 24276 0.72 0.652246
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21922 3' -50.5 NC_004913.1 + 35923 0.75 0.507942
Target:  5'- gCCGCCAuACggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGU-UGuuGUAAUGgcCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 10919 0.78 0.378811
Target:  5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3'
miRNA:   3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 59305 0.68 0.874185
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 11629 0.68 0.874185
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
21922 3' -50.5 NC_004913.1 + 10199 0.66 0.944707
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 55965 0.66 0.940176
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 30694 0.66 0.939658
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 21481 0.66 0.934868
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 31430 0.67 0.923384
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 2787 0.67 0.923384
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21922 3' -50.5 NC_004913.1 + 6914 0.67 0.910741
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 58059 0.67 0.910741
Target:  5'- -aGCCAAa---AUUugUGGCGGCACa -3'
miRNA:   3'- ggUGGUUguugUAAugGCCGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 55045 0.67 0.903989
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 19428 0.67 0.902604
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
21922 3' -50.5 NC_004913.1 + 20600 0.67 0.896953
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.