miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 18611 0.75 0.497297
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
21922 3' -50.5 NC_004913.1 + 6045 0.66 0.934868
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 55458 0.66 0.929271
Target:  5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3'
miRNA:   3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 11137 0.67 0.923384
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 19613 0.67 0.917207
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 54825 0.68 0.889636
Target:  5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3'
miRNA:   3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5'
21922 3' -50.5 NC_004913.1 + 2882 0.68 0.889636
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 20690 0.68 0.882045
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 16488 0.69 0.831098
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
21922 3' -50.5 NC_004913.1 + 54956 0.74 0.540424
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 22556 0.71 0.72991
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 6137 0.7 0.761898
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
21922 3' -50.5 NC_004913.1 + 20335 0.7 0.782546
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21922 3' -50.5 NC_004913.1 + 53222 0.7 0.800572
Target:  5'- gCCACCAGCGACcccggguAUUACUuuguugugguucuGGCAGgGCa -3'
miRNA:   3'- -GGUGGUUGUUG-------UAAUGG-------------CCGUCgUGc -5'
21922 3' -50.5 NC_004913.1 + 17032 0.69 0.812261
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 26711 1.13 0.001912
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 10199 0.66 0.944707
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 55965 0.66 0.940176
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 30694 0.66 0.939658
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 21481 0.66 0.934868
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.