Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21922 | 3' | -50.5 | NC_004913.1 | + | 2787 | 0.67 | 0.923384 |
Target: 5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3' miRNA: 3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 20087 | 0.69 | 0.849057 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 26233 | 0.7 | 0.782546 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 26711 | 1.13 | 0.001912 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 51276 | 0.66 | 0.949932 |
Target: 5'- uCCACCcccugaagGACGGCGUUuuaCGGC-GCACc -3' miRNA: 3'- -GGUGG--------UUGUUGUAAug-GCCGuCGUGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 10199 | 0.66 | 0.944707 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 55965 | 0.66 | 0.940176 |
Target: 5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3' miRNA: 3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 30694 | 0.66 | 0.939658 |
Target: 5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 21481 | 0.66 | 0.934868 |
Target: 5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3' miRNA: 3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 6292 | 0.68 | 0.855977 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 59305 | 0.68 | 0.874185 |
Target: 5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3' miRNA: 3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 11629 | 0.68 | 0.874185 |
Target: 5'- uUACCGGCAAac---CCGGCGGCAa- -3' miRNA: 3'- gGUGGUUGUUguaauGGCCGUCGUgc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 6914 | 0.67 | 0.910741 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 19533 | 0.68 | 0.866062 |
Target: 5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3' miRNA: 3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 58059 | 0.67 | 0.910741 |
Target: 5'- -aGCCAAa---AUUugUGGCGGCACa -3' miRNA: 3'- ggUGGUUguugUAAugGCCGUCGUGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 20600 | 0.67 | 0.896953 |
Target: 5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3' miRNA: 3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 5983 | 0.68 | 0.857683 |
Target: 5'- gCCACCGAC--CAUUACCGuGC-GUACc -3' miRNA: 3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 11926 | 0.69 | 0.849057 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 55045 | 0.67 | 0.903989 |
Target: 5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' |
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21922 | 3' | -50.5 | NC_004913.1 | + | 19428 | 0.67 | 0.902604 |
Target: 5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3' miRNA: 3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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