miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 59305 0.68 0.874185
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 19533 0.68 0.866062
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
21922 3' -50.5 NC_004913.1 + 5983 0.68 0.857683
Target:  5'- gCCACCGAC--CAUUACCGuGC-GUACc -3'
miRNA:   3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5'
21922 3' -50.5 NC_004913.1 + 6292 0.68 0.855977
Target:  5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3'
miRNA:   3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5'
21922 3' -50.5 NC_004913.1 + 20087 0.69 0.849057
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 11926 0.69 0.849057
Target:  5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3'
miRNA:   3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5'
21922 3' -50.5 NC_004913.1 + 16488 0.69 0.831098
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
21922 3' -50.5 NC_004913.1 + 17032 0.69 0.812261
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 53222 0.7 0.800572
Target:  5'- gCCACCAGCGACcccggguAUUACUuuguugugguucuGGCAGgGCa -3'
miRNA:   3'- -GGUGGUUGUUG-------UAAUGG-------------CCGUCgUGc -5'
21922 3' -50.5 NC_004913.1 + 26233 0.7 0.782546
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21922 3' -50.5 NC_004913.1 + 20335 0.7 0.782546
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21922 3' -50.5 NC_004913.1 + 6137 0.7 0.761898
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
21922 3' -50.5 NC_004913.1 + 22556 0.71 0.72991
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 19583 0.71 0.719026
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 29010 0.71 0.719026
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21922 3' -50.5 NC_004913.1 + 19695 0.71 0.719026
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 24276 0.72 0.652246
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21922 3' -50.5 NC_004913.1 + 54956 0.74 0.540424
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 35923 0.75 0.507942
Target:  5'- gCCGCCAuACggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGU-UGuuGUAAUGgcCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 18611 0.75 0.497297
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.