miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22078 5' -55.7 NC_004927.1 + 20233 0.66 0.78755
Target:  5'- uCGCCgGGGACGGACuugccacgGAggucgaacacGUCGGC-Ca -3'
miRNA:   3'- uGCGG-CCCUGCCUGua------CU----------UAGUCGaG- -5'
22078 5' -55.7 NC_004927.1 + 24531 0.66 0.78755
Target:  5'- aGCGCCGGGAUGuGGCGUau-UCGGa-- -3'
miRNA:   3'- -UGCGGCCCUGC-CUGUAcuuAGUCgag -5'
22078 5' -55.7 NC_004927.1 + 26566 0.71 0.494313
Target:  5'- cCGuCCGGGgugguagcgGCGGAgGUGggUCGGCa- -3'
miRNA:   3'- uGC-GGCCC---------UGCCUgUACuuAGUCGag -5'
22078 5' -55.7 NC_004927.1 + 28811 0.67 0.727267
Target:  5'- gAUGCCGGGAaccguUGcGGCGUGAagaagggcGUCGGCg- -3'
miRNA:   3'- -UGCGGCCCU-----GC-CUGUACU--------UAGUCGag -5'
22078 5' -55.7 NC_004927.1 + 47406 1.09 0.001325
Target:  5'- aACGCCGGGACGGACAUGAAUCAGCUCu -3'
miRNA:   3'- -UGCGGCCCUGCCUGUACUUAGUCGAG- -5'
22078 5' -55.7 NC_004927.1 + 50395 0.69 0.599095
Target:  5'- cUGCCGGGAgCGGugGUGGuggugcuggcgGUCAGaCUg -3'
miRNA:   3'- uGCGGCCCU-GCCugUACU-----------UAGUC-GAg -5'
22078 5' -55.7 NC_004927.1 + 62166 0.66 0.774884
Target:  5'- -gGCCGuGGGaaacguuccaccCGGAUGUGAAcgaaauccggcuacUCAGCUCg -3'
miRNA:   3'- ugCGGC-CCU------------GCCUGUACUU--------------AGUCGAG- -5'
22078 5' -55.7 NC_004927.1 + 65788 0.67 0.716838
Target:  5'- -aGCgCGGGAUGGACA--AGUCuGCUa -3'
miRNA:   3'- ugCG-GCCCUGCCUGUacUUAGuCGAg -5'
22078 5' -55.7 NC_004927.1 + 69245 0.67 0.69575
Target:  5'- cGCGCCGaGGAUGGugAgcugGuuUCGGUUg -3'
miRNA:   3'- -UGCGGC-CCUGCCugUa---CuuAGUCGAg -5'
22078 5' -55.7 NC_004927.1 + 75542 0.69 0.599095
Target:  5'- -aGUCGGGGuCGGAUGgggagGggUCGGCUa -3'
miRNA:   3'- ugCGGCCCU-GCCUGUa----CuuAGUCGAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.