miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22078	5'	-55.7	NC_004927.1	+	75542	0.69	0.599095
	Target:  5'- -aGUCGGGGuCGGAUGgggagGggUCGGCUa -3' miRNA:   3'- ugCGGCCCU-GCCUGUa----CuuAGUCGAg -5'
22078	5'	-55.7	NC_004927.1	+	69245	0.67	0.69575
	Target:  5'- cGCGCCGaGGAUGGugAgcugGuuUCGGUUg -3' miRNA:   3'- -UGCGGC-CCUGCCugUa---CuuAGUCGAg -5'
22078	5'	-55.7	NC_004927.1	+	65788	0.67	0.716838
	Target:  5'- -aGCgCGGGAUGGACA--AGUCuGCUa -3' miRNA:   3'- ugCG-GCCCUGCCUGUacUUAGuCGAg -5'
22078	5'	-55.7	NC_004927.1	+	62166	0.66	0.774884
	Target:  5'- -gGCCGuGGGaaacguuccaccCGGAUGUGAAcgaaauccggcuacUCAGCUCg -3' miRNA:   3'- ugCGGC-CCU------------GCCUGUACUU--------------AGUCGAG- -5'
22078	5'	-55.7	NC_004927.1	+	50395	0.69	0.599095
	Target:  5'- cUGCCGGGAgCGGugGUGGuggugcuggcgGUCAGaCUg -3' miRNA:   3'- uGCGGCCCU-GCCugUACU-----------UAGUC-GAg -5'
22078	5'	-55.7	NC_004927.1	+	47406	1.09	0.001325
	Target:  5'- aACGCCGGGACGGACAUGAAUCAGCUCu -3' miRNA:   3'- -UGCGGCCCUGCCUGUACUUAGUCGAG- -5'
22078	5'	-55.7	NC_004927.1	+	28811	0.67	0.727267
	Target:  5'- gAUGCCGGGAaccguUGcGGCGUGAagaagggcGUCGGCg- -3' miRNA:   3'- -UGCGGCCCU-----GC-CUGUACU--------UAGUCGag -5'
22078	5'	-55.7	NC_004927.1	+	26566	0.71	0.494313
	Target:  5'- cCGuCCGGGgugguagcgGCGGAgGUGggUCGGCa- -3' miRNA:   3'- uGC-GGCCC---------UGCCUgUACuuAGUCGag -5'
22078	5'	-55.7	NC_004927.1	+	24531	0.66	0.78755
	Target:  5'- aGCGCCGGGAUGuGGCGUau-UCGGa-- -3' miRNA:   3'- -UGCGGCCCUGC-CUGUAcuuAGUCgag -5'
22078	5'	-55.7	NC_004927.1	+	20233	0.66	0.78755
	Target:  5'- uCGCCgGGGACGGACuugccacgGAggucgaacacGUCGGC-Ca -3' miRNA:   3'- uGCGG-CCCUGCCUGua------CU----------UAGUCGaG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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