miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 42374 1.12 0.00027
Target:  5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3'
miRNA:   3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 42226 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 42215 0.68 0.402371
Target:  5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3'
miRNA:   3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 41588 0.68 0.421457
Target:  5'- --gGGGUAGCGCcGCCCucgccGCCCAGg -3'
miRNA:   3'- cuaCUCGUCGUGuCGGGca---UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 41377 0.66 0.502852
Target:  5'- --cGAGCAGUACcucgcuGgCCGUAacaCCGGCc -3'
miRNA:   3'- cuaCUCGUCGUGu-----CgGGCAUg--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 41052 0.67 0.451081
Target:  5'- ---aAGCGGCagACGGCCCGUGCggaGGCc -3'
miRNA:   3'- cuacUCGUCG--UGUCGGGCAUGgg-UCG- -5'
22232 3' -56.7 NC_005045.1 + 40517 0.68 0.411845
Target:  5'- -cUGcGCGGCGCAGCCCuggcggcUGCCCucGCc -3'
miRNA:   3'- cuACuCGUCGUGUCGGGc------AUGGGu-CG- -5'
22232 3' -56.7 NC_005045.1 + 40491 0.73 0.188013
Target:  5'- uGAUGAGCugugcgcccacauagAGCGCGGUgaGUACCgCAGCa -3'
miRNA:   3'- -CUACUCG---------------UCGUGUCGggCAUGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 40430 0.69 0.374793
Target:  5'- uGUGGGC-GCACAGCUCaucACCCuGCu -3'
miRNA:   3'- cUACUCGuCGUGUCGGGca-UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 39668 0.72 0.231061
Target:  5'- -cUGGGCGGCACgcuuGGCCCGUACauCCAcGUc -3'
miRNA:   3'- cuACUCGUCGUG----UCGGGCAUG--GGU-CG- -5'
22232 3' -56.7 NC_005045.1 + 38218 0.71 0.285051
Target:  5'- -cUGAGCGGCugGGCCUGcUACaUgAGCu -3'
miRNA:   3'- cuACUCGUCGugUCGGGC-AUG-GgUCG- -5'
22232 3' -56.7 NC_005045.1 + 35953 0.66 0.524282
Target:  5'- aAUGA--GGCGCuGCgCCGUGCCCugGGCu -3'
miRNA:   3'- cUACUcgUCGUGuCG-GGCAUGGG--UCG- -5'
22232 3' -56.7 NC_005045.1 + 34829 0.71 0.269976
Target:  5'- --cGGGCGGCgcagggggaugaaGCGGCCCuucgaGUGCuCCAGCa -3'
miRNA:   3'- cuaCUCGUCG-------------UGUCGGG-----CAUG-GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 34412 0.71 0.285051
Target:  5'- cGUGAGCaccAGCuCGGcCCCGUugCaCAGCg -3'
miRNA:   3'- cUACUCG---UCGuGUC-GGGCAugG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 34083 0.66 0.524282
Target:  5'- aGAUcGAGCAGaaGCAGUCCG-ACCagGGCa -3'
miRNA:   3'- -CUA-CUCGUCg-UGUCGGGCaUGGg-UCG- -5'
22232 3' -56.7 NC_005045.1 + 32499 0.73 0.185955
Target:  5'- --cGAGCuGCACAGCCUGUcagGCCguaAGCu -3'
miRNA:   3'- cuaCUCGuCGUGUCGGGCA---UGGg--UCG- -5'
22232 3' -56.7 NC_005045.1 + 32229 0.66 0.521045
Target:  5'- ----uGCGGCAucCAGCCCaGcaacauacccgacuUGCCCAGCg -3'
miRNA:   3'- cuacuCGUCGU--GUCGGG-C--------------AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 30633 0.66 0.539489
Target:  5'- --aGGGCuuCGCGGCCCGUgucgcuggugagcagACCC-GCa -3'
miRNA:   3'- cuaCUCGucGUGUCGGGCA---------------UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 30280 0.69 0.365889
Target:  5'- aGAUGGGCAuuGCccCGGCCCagGCCCuGCg -3'
miRNA:   3'- -CUACUCGU--CGu-GUCGGGcaUGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 30086 0.74 0.161865
Target:  5'- cGUGGGCAGCGCGGUUCGcaugAUCCAGg -3'
miRNA:   3'- cUACUCGUCGUGUCGGGCa---UGGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.