miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 42374 1.12 0.00027
Target:  5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3'
miRNA:   3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 13591 0.66 0.524282
Target:  5'- cAUGAuGUcGCGCAGCCCuuguugACCuCGGCg -3'
miRNA:   3'- cUACU-CGuCGUGUCGGGca----UGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 29490 0.66 0.546052
Target:  5'- -cUGAGCcuGCACAGCCU-UGgCCAGg -3'
miRNA:   3'- cuACUCGu-CGUGUCGGGcAUgGGUCg -5'
22232 3' -56.7 NC_005045.1 + 23744 0.66 0.546052
Target:  5'- uGAUGAcGU-GCugAGCCUGggccggACCCAGg -3'
miRNA:   3'- -CUACU-CGuCGugUCGGGCa-----UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 11249 0.72 0.218985
Target:  5'- -cUGGcGCAGCAU-GCCauccaGUACCCGGCg -3'
miRNA:   3'- cuACU-CGUCGUGuCGGg----CAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 26882 0.72 0.237308
Target:  5'- cGGUGccGUAG-GCGGCCCGcucUGCCCAGCg -3'
miRNA:   3'- -CUACu-CGUCgUGUCGGGC---AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 163 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 2281 0.71 0.277791
Target:  5'- aGGUaAGCAGCgGCGGCCagGUAgCCGGCa -3'
miRNA:   3'- -CUAcUCGUCG-UGUCGGg-CAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 7241 0.69 0.365889
Target:  5'- uGUGAGCAGCAC-GCCCaggGCCaccagacugaaGGCg -3'
miRNA:   3'- cUACUCGUCGUGuCGGGca-UGGg----------UCG- -5'
22232 3' -56.7 NC_005045.1 + 32229 0.66 0.521045
Target:  5'- ----uGCGGCAucCAGCCCaGcaacauacccgacuUGCCCAGCg -3'
miRNA:   3'- cuacuCGUCGU--GUCGGG-C--------------AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 41588 0.68 0.421457
Target:  5'- --gGGGUAGCGCcGCCCucgccGCCCAGg -3'
miRNA:   3'- cuaCUCGUCGUGuCGGGca---UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 7019 0.69 0.340063
Target:  5'- ---cAGcCAGCucgGCGGCCCGUACCaguuCAGCg -3'
miRNA:   3'- cuacUC-GUCG---UGUCGGGCAUGG----GUCG- -5'
22232 3' -56.7 NC_005045.1 + 311 1.12 0.00027
Target:  5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3'
miRNA:   3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 18212 0.67 0.480771
Target:  5'- cGAUGGGUAGCAuccgcauCAGCaugaugCGUGCCCuggggauGCg -3'
miRNA:   3'- -CUACUCGUCGU-------GUCGg-----GCAUGGGu------CG- -5'
22232 3' -56.7 NC_005045.1 + 4490 0.73 0.185955
Target:  5'- --cGGGCAGCACugcgggacGGCCCGUGcuguCCCAaGCu -3'
miRNA:   3'- cuaCUCGUCGUG--------UCGGGCAU----GGGU-CG- -5'
22232 3' -56.7 NC_005045.1 + 18347 0.7 0.323593
Target:  5'- uGAUGAGCAuCgACAGCCCa-GCCCgcAGCg -3'
miRNA:   3'- -CUACUCGUcG-UGUCGGGcaUGGG--UCG- -5'
22232 3' -56.7 NC_005045.1 + 2826 0.66 0.502852
Target:  5'- uGAUGAGUccagcgaugGGUGCAGCCUugGCggCCAGCg -3'
miRNA:   3'- -CUACUCG---------UCGUGUCGGGcaUG--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 30633 0.66 0.539489
Target:  5'- --aGGGCuuCGCGGCCCGUgucgcuggugagcagACCC-GCa -3'
miRNA:   3'- cuaCUCGucGUGUCGGGCA---------------UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 40491 0.73 0.188013
Target:  5'- uGAUGAGCugugcgcccacauagAGCGCGGUgaGUACCgCAGCa -3'
miRNA:   3'- -CUACUCG---------------UCGUGUCGggCAUGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 42226 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.