miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 18062 0.66 0.522123
Target:  5'- --gGGGCGGCGCAgaacgacGCCCGcauUGCCUuggagaaGGCg -3'
miRNA:   3'- cuaCUCGUCGUGU-------CGGGC---AUGGG-------UCG- -5'
22232 3' -56.7 NC_005045.1 + 18212 0.67 0.480771
Target:  5'- cGAUGGGUAGCAuccgcauCAGCaugaugCGUGCCCuggggauGCg -3'
miRNA:   3'- -CUACUCGUCGU-------GUCGg-----GCAUGGGu------CG- -5'
22232 3' -56.7 NC_005045.1 + 18347 0.7 0.323593
Target:  5'- uGAUGAGCAuCgACAGCCCa-GCCCgcAGCg -3'
miRNA:   3'- -CUACUCGUcG-UGUCGGGcaUGGG--UCG- -5'
22232 3' -56.7 NC_005045.1 + 23033 0.68 0.401431
Target:  5'- gGcgGAGCAGCagcgucaGCAGgCCGcgcagGCCCAGg -3'
miRNA:   3'- -CuaCUCGUCG-------UGUCgGGCa----UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 23245 0.67 0.48808
Target:  5'- cGGUGAuccaGCAGCAggcuccggucCAGCCCGgucaggugggugcGCCgCAGCa -3'
miRNA:   3'- -CUACU----CGUCGU----------GUCGGGCa------------UGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 23744 0.66 0.546052
Target:  5'- uGAUGAcGU-GCugAGCCUGggccggACCCAGg -3'
miRNA:   3'- -CUACU-CGuCGugUCGGGCa-----UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 25787 0.68 0.402371
Target:  5'- cGGUG-GCGGCGCAGCuuGaggACCUgAGUa -3'
miRNA:   3'- -CUACuCGUCGUGUCGggCa--UGGG-UCG- -5'
22232 3' -56.7 NC_005045.1 + 26044 0.73 0.207451
Target:  5'- cGAUGcuGGUGGCGCAGCaCCGUGgCgAGCu -3'
miRNA:   3'- -CUAC--UCGUCGUGUCG-GGCAUgGgUCG- -5'
22232 3' -56.7 NC_005045.1 + 26882 0.72 0.237308
Target:  5'- cGGUGccGUAG-GCGGCCCGcucUGCCCAGCg -3'
miRNA:   3'- -CUACu-CGUCgUGUCGGGC---AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 27796 0.76 0.125501
Target:  5'- cGUGuauCAGCuACAGCCCGUGgCCGGCg -3'
miRNA:   3'- cUACuc-GUCG-UGUCGGGCAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 29052 0.66 0.513522
Target:  5'- cGGUGAGCGu----GCCCGUAUggCCGGCg -3'
miRNA:   3'- -CUACUCGUcguguCGGGCAUG--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 29490 0.66 0.546052
Target:  5'- -cUGAGCcuGCACAGCCU-UGgCCAGg -3'
miRNA:   3'- cuACUCGu-CGUGUCGGGcAUgGGUCg -5'
22232 3' -56.7 NC_005045.1 + 30086 0.74 0.161865
Target:  5'- cGUGGGCAGCGCGGUUCGcaugAUCCAGg -3'
miRNA:   3'- cUACUCGUCGUGUCGGGCa---UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 30280 0.69 0.365889
Target:  5'- aGAUGGGCAuuGCccCGGCCCagGCCCuGCg -3'
miRNA:   3'- -CUACUCGU--CGu-GUCGGGcaUGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 30633 0.66 0.539489
Target:  5'- --aGGGCuuCGCGGCCCGUgucgcuggugagcagACCC-GCa -3'
miRNA:   3'- cuaCUCGucGUGUCGGGCA---------------UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 32229 0.66 0.521045
Target:  5'- ----uGCGGCAucCAGCCCaGcaacauacccgacuUGCCCAGCg -3'
miRNA:   3'- cuacuCGUCGU--GUCGGG-C--------------AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 32499 0.73 0.185955
Target:  5'- --cGAGCuGCACAGCCUGUcagGCCguaAGCu -3'
miRNA:   3'- cuaCUCGuCGUGUCGGGCA---UGGg--UCG- -5'
22232 3' -56.7 NC_005045.1 + 34083 0.66 0.524282
Target:  5'- aGAUcGAGCAGaaGCAGUCCG-ACCagGGCa -3'
miRNA:   3'- -CUA-CUCGUCg-UGUCGGGCaUGGg-UCG- -5'
22232 3' -56.7 NC_005045.1 + 34412 0.71 0.285051
Target:  5'- cGUGAGCaccAGCuCGGcCCCGUugCaCAGCg -3'
miRNA:   3'- cUACUCG---UCGuGUC-GGGCAugG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 34829 0.71 0.269976
Target:  5'- --cGGGCGGCgcagggggaugaaGCGGCCCuucgaGUGCuCCAGCa -3'
miRNA:   3'- cuaCUCGUCG-------------UGUCGGG-----CAUG-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.