Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22232 | 3' | -56.7 | NC_005045.1 | + | 18347 | 0.7 | 0.323593 |
Target: 5'- uGAUGAGCAuCgACAGCCCa-GCCCgcAGCg -3' miRNA: 3'- -CUACUCGUcG-UGUCGGGcaUGGG--UCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 7019 | 0.69 | 0.340063 |
Target: 5'- ---cAGcCAGCucgGCGGCCCGUACCaguuCAGCg -3' miRNA: 3'- cuacUC-GUCG---UGUCGGGCAUGG----GUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 6574 | 0.69 | 0.348523 |
Target: 5'- aGAUGAGCAagACgAGCCUGUAUCC-GCu -3' miRNA: 3'- -CUACUCGUcgUG-UCGGGCAUGGGuCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 30280 | 0.69 | 0.365889 |
Target: 5'- aGAUGGGCAuuGCccCGGCCCagGCCCuGCg -3' miRNA: 3'- -CUACUCGU--CGu-GUCGGGcaUGGGuCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 7241 | 0.69 | 0.365889 |
Target: 5'- uGUGAGCAGCAC-GCCCaggGCCaccagacugaaGGCg -3' miRNA: 3'- cUACUCGUCGUGuCGGGca-UGGg----------UCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 40430 | 0.69 | 0.374793 |
Target: 5'- uGUGGGC-GCACAGCUCaucACCCuGCu -3' miRNA: 3'- cUACUCGuCGUGUCGGGca-UGGGuCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 5750 | 0.68 | 0.383842 |
Target: 5'- --cGGGUAGCGgcCAGCuuGUGCCaGGCc -3' miRNA: 3'- cuaCUCGUCGU--GUCGggCAUGGgUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 23033 | 0.68 | 0.401431 |
Target: 5'- gGcgGAGCAGCagcgucaGCAGgCCGcgcagGCCCAGg -3' miRNA: 3'- -CuaCUCGUCG-------UGUCgGGCa----UGGGUCg -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 152 | 0.68 | 0.402371 |
Target: 5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3' miRNA: 3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 25787 | 0.68 | 0.402371 |
Target: 5'- cGGUG-GCGGCGCAGCuuGaggACCUgAGUa -3' miRNA: 3'- -CUACuCGUCGUGUCGggCa--UGGG-UCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 42215 | 0.68 | 0.402371 |
Target: 5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3' miRNA: 3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 40517 | 0.68 | 0.411845 |
Target: 5'- -cUGcGCGGCGCAGCCCuggcggcUGCCCucGCc -3' miRNA: 3'- cuACuCGUCGUGUCGGGc------AUGGGu-CG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 3174 | 0.68 | 0.42049 |
Target: 5'- aGAUGGGaCGgccauucGCACAGCCUuugcgGUAUUCAGCg -3' miRNA: 3'- -CUACUC-GU-------CGUGUCGGG-----CAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 41588 | 0.68 | 0.421457 |
Target: 5'- --gGGGUAGCGCcGCCCucgccGCCCAGg -3' miRNA: 3'- cuaCUCGUCGUGuCGGGca---UGGGUCg -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 41052 | 0.67 | 0.451081 |
Target: 5'- ---aAGCGGCagACGGCCCGUGCggaGGCc -3' miRNA: 3'- cuacUCGUCG--UGUCGGGCAUGgg-UCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 10390 | 0.67 | 0.455117 |
Target: 5'- cGAUGAGCGccGCGCcauGGUCCGcagccucauggaagaUugCCGGCg -3' miRNA: 3'- -CUACUCGU--CGUG---UCGGGC---------------AugGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 13834 | 0.67 | 0.461208 |
Target: 5'- ---cGGCAGCGCGGCagcacugGUGgCCAGCa -3' miRNA: 3'- cuacUCGUCGUGUCGgg-----CAUgGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 18212 | 0.67 | 0.480771 |
Target: 5'- cGAUGGGUAGCAuccgcauCAGCaugaugCGUGCCCuggggauGCg -3' miRNA: 3'- -CUACUCGUCGU-------GUCGg-----GCAUGGGu------CG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 23245 | 0.67 | 0.48808 |
Target: 5'- cGGUGAuccaGCAGCAggcuccggucCAGCCCGgucaggugggugcGCCgCAGCa -3' miRNA: 3'- -CUACU----CGUCGU----------GUCGGGCa------------UGG-GUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 41377 | 0.66 | 0.502852 |
Target: 5'- --cGAGCAGUACcucgcuGgCCGUAacaCCGGCc -3' miRNA: 3'- cuaCUCGUCGUGu-----CgGGCAUg--GGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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