miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22256 5' -66 NC_005045.1 + 15063 1.1 0.000053
Target:  5'- gGAGCCGCCACCGGGGCCACCUGCGGCa -3'
miRNA:   3'- -CUCGGCGGUGGCCCCGGUGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 15018 0.78 0.02091
Target:  5'- uGGGCCucggcaguaccuaCCACCGGGGCggcgacauucgcCACCUGCGGCa -3'
miRNA:   3'- -CUCGGc------------GGUGGCCCCG------------GUGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 18634 0.78 0.021028
Target:  5'- gGAGCCGUCGCCGGaGGCCAgggaguuCCUccaggaccccucgGCGGCa -3'
miRNA:   3'- -CUCGGCGGUGGCC-CCGGU-------GGA-------------CGCCG- -5'
22256 5' -66 NC_005045.1 + 27266 0.78 0.022376
Target:  5'- -uGCCGCCACCGGGGaCCacgGCCUGauacuucuUGGCg -3'
miRNA:   3'- cuCGGCGGUGGCCCC-GG---UGGAC--------GCCG- -5'
22256 5' -66 NC_005045.1 + 23484 0.73 0.056411
Target:  5'- cAGCCggcggaGCUACCGGGGCCggcugagcggguGCUUGCGGa -3'
miRNA:   3'- cUCGG------CGGUGGCCCCGG------------UGGACGCCg -5'
22256 5' -66 NC_005045.1 + 26806 0.73 0.057997
Target:  5'- --aCCGCCGCUGggcagagcGGGCCGCCUaCGGCa -3'
miRNA:   3'- cucGGCGGUGGC--------CCCGGUGGAcGCCG- -5'
22256 5' -66 NC_005045.1 + 8615 0.71 0.078538
Target:  5'- aGGGCCuCCacGCCGGGGCCucgguGCUgGUGGCa -3'
miRNA:   3'- -CUCGGcGG--UGGCCCCGG-----UGGaCGCCG- -5'
22256 5' -66 NC_005045.1 + 29521 0.71 0.085022
Target:  5'- uGAGCUGCCgggacaguucgucGCCGGuGGCCugaGCCUGCacagccuuGGCc -3'
miRNA:   3'- -CUCGGCGG-------------UGGCC-CCGG---UGGACG--------CCG- -5'
22256 5' -66 NC_005045.1 + 35441 0.7 0.092515
Target:  5'- cAGCCGCCACCGGcGaUAUCgucaGCGGCg -3'
miRNA:   3'- cUCGGCGGUGGCCcCgGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 32273 0.7 0.097678
Target:  5'- aGAGCaccCGCCAcgauguagguuCCGGcauccacgucGGCC-CCUGCGGCa -3'
miRNA:   3'- -CUCG---GCGGU-----------GGCC----------CCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 32345 0.7 0.103112
Target:  5'- uAGCCaugaCCGCCgaGGaGGCCGCCgcacGCGGCu -3'
miRNA:   3'- cUCGGc---GGUGG--CC-CCGGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 23947 0.7 0.103112
Target:  5'- cAGCCGCCAacccCUGGGuGCugcggCACCUGCccuGGCa -3'
miRNA:   3'- cUCGGCGGU----GGCCC-CG-----GUGGACG---CCG- -5'
22256 5' -66 NC_005045.1 + 27420 0.69 0.10883
Target:  5'- cGAGCUacaUGCCGGGGCCGgCUgaguacauccagGCGGCg -3'
miRNA:   3'- -CUCGGcg-GUGGCCCCGGUgGA------------CGCCG- -5'
22256 5' -66 NC_005045.1 + 16452 0.69 0.10883
Target:  5'- -cGCCGCUuuacguUUGGcGGCUGCCUGcCGGCg -3'
miRNA:   3'- cuCGGCGGu-----GGCC-CCGGUGGAC-GCCG- -5'
22256 5' -66 NC_005045.1 + 32343 0.69 0.111799
Target:  5'- cGGuuG-CGuuGGGGCC-UCUGCGGCa -3'
miRNA:   3'- cUCggCgGUggCCCCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 16755 0.69 0.113923
Target:  5'- uGGCCGaCCacguugcccacggcGCCGGGGaacuuccggaCCACCUcaGCGGCc -3'
miRNA:   3'- cUCGGC-GG--------------UGGCCCC----------GGUGGA--CGCCG- -5'
22256 5' -66 NC_005045.1 + 21126 0.69 0.114844
Target:  5'- cAGgCGCCGCCGGccaacuGGCCAUC-GCGGa -3'
miRNA:   3'- cUCgGCGGUGGCC------CCGGUGGaCGCCg -5'
22256 5' -66 NC_005045.1 + 17896 0.69 0.117966
Target:  5'- cAGCCuCCucggUCaGGGCCACCUcgGCGGCg -3'
miRNA:   3'- cUCGGcGGu---GGcCCCGGUGGA--CGCCG- -5'
22256 5' -66 NC_005045.1 + 5623 0.69 0.121167
Target:  5'- -cGCgGCgCAucuCCGGGGUCACCUGgGaGCc -3'
miRNA:   3'- cuCGgCG-GU---GGCCCCGGUGGACgC-CG- -5'
22256 5' -66 NC_005045.1 + 37391 0.68 0.123456
Target:  5'- -cGCCGCCGCCGGGaCCGggauuauccagguuCCUGCa-- -3'
miRNA:   3'- cuCGGCGGUGGCCCcGGU--------------GGACGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.