miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22256 5' -66 NC_005045.1 + 18634 0.78 0.021028
Target:  5'- gGAGCCGUCGCCGGaGGCCAgggaguuCCUccaggaccccucgGCGGCa -3'
miRNA:   3'- -CUCGGCGGUGGCC-CCGGU-------GGA-------------CGCCG- -5'
22256 5' -66 NC_005045.1 + 38953 0.67 0.15789
Target:  5'- -cGCCGCCcuCCaGGGCUACCg--GGCu -3'
miRNA:   3'- cuCGGCGGu-GGcCCCGGUGGacgCCG- -5'
22256 5' -66 NC_005045.1 + 25942 0.67 0.162071
Target:  5'- cGGCgGCCAgCGGuaucgagcugauGGcCCACCUGCuGCa -3'
miRNA:   3'- cUCGgCGGUgGCC------------CC-GGUGGACGcCG- -5'
22256 5' -66 NC_005045.1 + 10719 0.67 0.163772
Target:  5'- uGGCCGCCACCGGccugagcgaGGagcacauccagcuccUCACCUGCGc- -3'
miRNA:   3'- cUCGGCGGUGGCC---------CC---------------GGUGGACGCcg -5'
22256 5' -66 NC_005045.1 + 23768 0.67 0.166352
Target:  5'- -uGCCGCCGUCGGuggugaGGCCGuCCUGaagcaGGCu -3'
miRNA:   3'- cuCGGCGGUGGCC------CCGGU-GGACg----CCG- -5'
22256 5' -66 NC_005045.1 + 26163 0.67 0.166352
Target:  5'- cGGGCCGCCA-CGGuGGCCgaugACCUGUu-- -3'
miRNA:   3'- -CUCGGCGGUgGCC-CCGG----UGGACGccg -5'
22256 5' -66 NC_005045.1 + 32572 0.66 0.175218
Target:  5'- aAGCCGCU-CCaGGGcaucGCCGCCaagGUGGCu -3'
miRNA:   3'- cUCGGCGGuGG-CCC----CGGUGGa--CGCCG- -5'
22256 5' -66 NC_005045.1 + 23350 0.66 0.179808
Target:  5'- -cGCCGCacuaccaGCCGGuGGCgguGCCUGCcGCa -3'
miRNA:   3'- cuCGGCGg------UGGCC-CCGg--UGGACGcCG- -5'
22256 5' -66 NC_005045.1 + 17925 0.66 0.19422
Target:  5'- -cGCCGCCACCcuggaacaGGcGGUCACCc-UGGCc -3'
miRNA:   3'- cuCGGCGGUGG--------CC-CCGGUGGacGCCG- -5'
22256 5' -66 NC_005045.1 + 3044 0.67 0.153807
Target:  5'- cAGuCCGCUGuCCGGGcauGUCACCUGUcaGGCg -3'
miRNA:   3'- cUC-GGCGGU-GGCCC---CGGUGGACG--CCG- -5'
22256 5' -66 NC_005045.1 + 17657 0.67 0.149819
Target:  5'- uGGGCCGCCGaggucaaGGGCUACCUGCc-- -3'
miRNA:   3'- -CUCGGCGGUggc----CCCGGUGGACGccg -5'
22256 5' -66 NC_005045.1 + 26806 0.73 0.057997
Target:  5'- --aCCGCCGCUGggcagagcGGGCCGCCUaCGGCa -3'
miRNA:   3'- cucGGCGGUGGC--------CCCGGUGGAcGCCG- -5'
22256 5' -66 NC_005045.1 + 8615 0.71 0.078538
Target:  5'- aGGGCCuCCacGCCGGGGCCucgguGCUgGUGGCa -3'
miRNA:   3'- -CUCGGcGG--UGGCCCCGG-----UGGaCGCCG- -5'
22256 5' -66 NC_005045.1 + 35441 0.7 0.092515
Target:  5'- cAGCCGCCACCGGcGaUAUCgucaGCGGCg -3'
miRNA:   3'- cUCGGCGGUGGCCcCgGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 23947 0.7 0.103112
Target:  5'- cAGCCGCCAacccCUGGGuGCugcggCACCUGCccuGGCa -3'
miRNA:   3'- cUCGGCGGU----GGCCC-CG-----GUGGACG---CCG- -5'
22256 5' -66 NC_005045.1 + 32345 0.7 0.103112
Target:  5'- uAGCCaugaCCGCCgaGGaGGCCGCCgcacGCGGCu -3'
miRNA:   3'- cUCGGc---GGUGG--CC-CCGGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 27420 0.69 0.10883
Target:  5'- cGAGCUacaUGCCGGGGCCGgCUgaguacauccagGCGGCg -3'
miRNA:   3'- -CUCGGcg-GUGGCCCCGGUgGA------------CGCCG- -5'
22256 5' -66 NC_005045.1 + 37391 0.68 0.123456
Target:  5'- -cGCCGCCGCCGGGaCCGggauuauccagguuCCUGCa-- -3'
miRNA:   3'- cuCGGCGGUGGCCCcGGU--------------GGACGccg -5'
22256 5' -66 NC_005045.1 + 17820 0.68 0.127813
Target:  5'- uGGCCGCCGCCGaGGUgGCCcUGaccgaggaGGCu -3'
miRNA:   3'- cUCGGCGGUGGCcCCGgUGG-ACg-------CCG- -5'
22256 5' -66 NC_005045.1 + 9878 0.66 0.19422
Target:  5'- cGGGCCGCCuuCGGGGUCggGCCaGuuGUa -3'
miRNA:   3'- -CUCGGCGGugGCCCCGG--UGGaCgcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.