Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22256 | 5' | -66 | NC_005045.1 | + | 27266 | 0.78 | 0.022376 |
Target: 5'- -uGCCGCCACCGGGGaCCacgGCCUGauacuucuUGGCg -3' miRNA: 3'- cuCGGCGGUGGCCCC-GG---UGGAC--------GCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 15063 | 1.1 | 0.000053 |
Target: 5'- gGAGCCGCCACCGGGGCCACCUGCGGCa -3' miRNA: 3'- -CUCGGCGGUGGCCCCGGUGGACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 17896 | 0.69 | 0.117966 |
Target: 5'- cAGCCuCCucggUCaGGGCCACCUcgGCGGCg -3' miRNA: 3'- cUCGGcGGu---GGcCCCGGUGGA--CGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 21126 | 0.69 | 0.114844 |
Target: 5'- cAGgCGCCGCCGGccaacuGGCCAUC-GCGGa -3' miRNA: 3'- cUCgGCGGUGGCC------CCGGUGGaCGCCg -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 32343 | 0.69 | 0.111799 |
Target: 5'- cGGuuG-CGuuGGGGCC-UCUGCGGCa -3' miRNA: 3'- cUCggCgGUggCCCCGGuGGACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 16452 | 0.69 | 0.10883 |
Target: 5'- -cGCCGCUuuacguUUGGcGGCUGCCUGcCGGCg -3' miRNA: 3'- cuCGGCGGu-----GGCC-CCGGUGGAC-GCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 22234 | 0.66 | 0.19422 |
Target: 5'- -cGCUGCCcgaACCGGacagguuGCgGCCUGCGcGCa -3' miRNA: 3'- cuCGGCGG---UGGCCc------CGgUGGACGC-CG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 40586 | 0.66 | 0.179808 |
Target: 5'- aGGGCaGCCGCCaGGGCUgcGCCgcgcaGgGGCu -3' miRNA: 3'- -CUCGgCGGUGGcCCCGG--UGGa----CgCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 32438 | 0.68 | 0.131261 |
Target: 5'- ---aCGUCACCGGccuugaaGCCGCgUGCGGCg -3' miRNA: 3'- cucgGCGGUGGCCc------CGGUGgACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 34807 | 0.68 | 0.127813 |
Target: 5'- -uGCCGUugagCACCGGgacGGCCugcuuACCUGCGuGCa -3' miRNA: 3'- cuCGGCG----GUGGCC---CCGG-----UGGACGC-CG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 16755 | 0.69 | 0.113923 |
Target: 5'- uGGCCGaCCacguugcccacggcGCCGGGGaacuuccggaCCACCUcaGCGGCc -3' miRNA: 3'- cUCGGC-GG--------------UGGCCCC----------GGUGGA--CGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 23484 | 0.73 | 0.056411 |
Target: 5'- cAGCCggcggaGCUACCGGGGCCggcugagcggguGCUUGCGGa -3' miRNA: 3'- cUCGG------CGGUGGCCCCGG------------UGGACGCCg -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 3243 | 0.68 | 0.145926 |
Target: 5'- cAGCC-CCACgCGGuGGCCGa-UGCGGUa -3' miRNA: 3'- cUCGGcGGUG-GCC-CCGGUggACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 29521 | 0.71 | 0.085022 |
Target: 5'- uGAGCUGCCgggacaguucgucGCCGGuGGCCugaGCCUGCacagccuuGGCc -3' miRNA: 3'- -CUCGGCGG-------------UGGCC-CCGG---UGGACG--------CCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 5623 | 0.69 | 0.121167 |
Target: 5'- -cGCgGCgCAucuCCGGGGUCACCUGgGaGCc -3' miRNA: 3'- cuCGgCG-GU---GGCCCCGGUGGACgC-CG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 25838 | 0.67 | 0.170291 |
Target: 5'- -cGCCGCCACCGGcugaaGCUacgcuugGCCUG-GGUg -3' miRNA: 3'- cuCGGCGGUGGCCc----CGG-------UGGACgCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 9878 | 0.66 | 0.19422 |
Target: 5'- cGGGCCGCCuuCGGGGUCggGCCaGuuGUa -3' miRNA: 3'- -CUCGGCGGugGCCCCGG--UGGaCgcCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 32273 | 0.7 | 0.097678 |
Target: 5'- aGAGCaccCGCCAcgauguagguuCCGGcauccacgucGGCC-CCUGCGGCa -3' miRNA: 3'- -CUCG---GCGGU-----------GGCC----------CCGGuGGACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 15018 | 0.78 | 0.02091 |
Target: 5'- uGGGCCucggcaguaccuaCCACCGGGGCggcgacauucgcCACCUGCGGCa -3' miRNA: 3'- -CUCGGc------------GGUGGCCCCG------------GUGGACGCCG- -5' |
|||||||
22256 | 5' | -66 | NC_005045.1 | + | 23768 | 0.67 | 0.166352 |
Target: 5'- -uGCCGCCGUCGGuggugaGGCCGuCCUGaagcaGGCu -3' miRNA: 3'- cuCGGCGGUGGCC------CCGGU-GGACg----CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home