Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22256 | 5' | -66 | NC_005045.1 | + | 3044 | 0.67 | 0.153807 |
Target: 5'- cAGuCCGCUGuCCGGGcauGUCACCUGUcaGGCg -3' miRNA: 3'- cUC-GGCGGU-GGCCC---CGGUGGACG--CCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 3243 | 0.68 | 0.145926 |
Target: 5'- cAGCC-CCACgCGGuGGCCGa-UGCGGUa -3' miRNA: 3'- cUCGGcGGUG-GCC-CCGGUggACGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 5623 | 0.69 | 0.121167 |
Target: 5'- -cGCgGCgCAucuCCGGGGUCACCUGgGaGCc -3' miRNA: 3'- cuCGgCG-GU---GGCCCCGGUGGACgC-CG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 8615 | 0.71 | 0.078538 |
Target: 5'- aGGGCCuCCacGCCGGGGCCucgguGCUgGUGGCa -3' miRNA: 3'- -CUCGGcGG--UGGCCCCGG-----UGGaCGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 9878 | 0.66 | 0.19422 |
Target: 5'- cGGGCCGCCuuCGGGGUCggGCCaGuuGUa -3' miRNA: 3'- -CUCGGCGGugGCCCCGG--UGGaCgcCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 10719 | 0.67 | 0.163772 |
Target: 5'- uGGCCGCCACCGGccugagcgaGGagcacauccagcuccUCACCUGCGc- -3' miRNA: 3'- cUCGGCGGUGGCC---------CC---------------GGUGGACGCcg -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 15018 | 0.78 | 0.02091 |
Target: 5'- uGGGCCucggcaguaccuaCCACCGGGGCggcgacauucgcCACCUGCGGCa -3' miRNA: 3'- -CUCGGc------------GGUGGCCCCG------------GUGGACGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 15063 | 1.1 | 0.000053 |
Target: 5'- gGAGCCGCCACCGGGGCCACCUGCGGCa -3' miRNA: 3'- -CUCGGCGGUGGCCCCGGUGGACGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 16452 | 0.69 | 0.10883 |
Target: 5'- -cGCCGCUuuacguUUGGcGGCUGCCUGcCGGCg -3' miRNA: 3'- cuCGGCGGu-----GGCC-CCGGUGGAC-GCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 16755 | 0.69 | 0.113923 |
Target: 5'- uGGCCGaCCacguugcccacggcGCCGGGGaacuuccggaCCACCUcaGCGGCc -3' miRNA: 3'- cUCGGC-GG--------------UGGCCCC----------GGUGGA--CGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 17657 | 0.67 | 0.149819 |
Target: 5'- uGGGCCGCCGaggucaaGGGCUACCUGCc-- -3' miRNA: 3'- -CUCGGCGGUggc----CCCGGUGGACGccg -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 17820 | 0.68 | 0.127813 |
Target: 5'- uGGCCGCCGCCGaGGUgGCCcUGaccgaggaGGCu -3' miRNA: 3'- cUCGGCGGUGGCcCCGgUGG-ACg-------CCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 17896 | 0.69 | 0.117966 |
Target: 5'- cAGCCuCCucggUCaGGGCCACCUcgGCGGCg -3' miRNA: 3'- cUCGGcGGu---GGcCCCGGUGGA--CGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 17925 | 0.66 | 0.19422 |
Target: 5'- -cGCCGCCACCcuggaacaGGcGGUCACCc-UGGCc -3' miRNA: 3'- cuCGGCGGUGG--------CC-CCGGUGGacGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 18634 | 0.78 | 0.021028 |
Target: 5'- gGAGCCGUCGCCGGaGGCCAgggaguuCCUccaggaccccucgGCGGCa -3' miRNA: 3'- -CUCGGCGGUGGCC-CCGGU-------GGA-------------CGCCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 21126 | 0.69 | 0.114844 |
Target: 5'- cAGgCGCCGCCGGccaacuGGCCAUC-GCGGa -3' miRNA: 3'- cUCgGCGGUGGCC------CCGGUGGaCGCCg -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 22234 | 0.66 | 0.19422 |
Target: 5'- -cGCUGCCcgaACCGGacagguuGCgGCCUGCGcGCa -3' miRNA: 3'- cuCGGCGG---UGGCCc------CGgUGGACGC-CG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 23350 | 0.66 | 0.179808 |
Target: 5'- -cGCCGCacuaccaGCCGGuGGCgguGCCUGCcGCa -3' miRNA: 3'- cuCGGCGg------UGGCC-CCGg--UGGACGcCG- -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 23484 | 0.73 | 0.056411 |
Target: 5'- cAGCCggcggaGCUACCGGGGCCggcugagcggguGCUUGCGGa -3' miRNA: 3'- cUCGG------CGGUGGCCCCGG------------UGGACGCCg -5' |
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22256 | 5' | -66 | NC_005045.1 | + | 23768 | 0.67 | 0.166352 |
Target: 5'- -uGCCGCCGUCGGuggugaGGCCGuCCUGaagcaGGCu -3' miRNA: 3'- cuCGGCGGUGGCC------CCGGU-GGACg----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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