miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22256 5' -66 NC_005045.1 + 23947 0.7 0.103112
Target:  5'- cAGCCGCCAacccCUGGGuGCugcggCACCUGCccuGGCa -3'
miRNA:   3'- cUCGGCGGU----GGCCC-CG-----GUGGACG---CCG- -5'
22256 5' -66 NC_005045.1 + 25838 0.67 0.170291
Target:  5'- -cGCCGCCACCGGcugaaGCUacgcuugGCCUG-GGUg -3'
miRNA:   3'- cuCGGCGGUGGCCc----CGG-------UGGACgCCG- -5'
22256 5' -66 NC_005045.1 + 25942 0.67 0.162071
Target:  5'- cGGCgGCCAgCGGuaucgagcugauGGcCCACCUGCuGCa -3'
miRNA:   3'- cUCGgCGGUgGCC------------CC-GGUGGACGcCG- -5'
22256 5' -66 NC_005045.1 + 26163 0.67 0.166352
Target:  5'- cGGGCCGCCA-CGGuGGCCgaugACCUGUu-- -3'
miRNA:   3'- -CUCGGCGGUgGCC-CCGG----UGGACGccg -5'
22256 5' -66 NC_005045.1 + 26806 0.73 0.057997
Target:  5'- --aCCGCCGCUGggcagagcGGGCCGCCUaCGGCa -3'
miRNA:   3'- cucGGCGGUGGC--------CCCGGUGGAcGCCG- -5'
22256 5' -66 NC_005045.1 + 27266 0.78 0.022376
Target:  5'- -uGCCGCCACCGGGGaCCacgGCCUGauacuucuUGGCg -3'
miRNA:   3'- cuCGGCGGUGGCCCC-GG---UGGAC--------GCCG- -5'
22256 5' -66 NC_005045.1 + 27420 0.69 0.10883
Target:  5'- cGAGCUacaUGCCGGGGCCGgCUgaguacauccagGCGGCg -3'
miRNA:   3'- -CUCGGcg-GUGGCCCCGGUgGA------------CGCCG- -5'
22256 5' -66 NC_005045.1 + 29521 0.71 0.085022
Target:  5'- uGAGCUGCCgggacaguucgucGCCGGuGGCCugaGCCUGCacagccuuGGCc -3'
miRNA:   3'- -CUCGGCGG-------------UGGCC-CCGG---UGGACG--------CCG- -5'
22256 5' -66 NC_005045.1 + 32273 0.7 0.097678
Target:  5'- aGAGCaccCGCCAcgauguagguuCCGGcauccacgucGGCC-CCUGCGGCa -3'
miRNA:   3'- -CUCG---GCGGU-----------GGCC----------CCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 32343 0.69 0.111799
Target:  5'- cGGuuG-CGuuGGGGCC-UCUGCGGCa -3'
miRNA:   3'- cUCggCgGUggCCCCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 32345 0.7 0.103112
Target:  5'- uAGCCaugaCCGCCgaGGaGGCCGCCgcacGCGGCu -3'
miRNA:   3'- cUCGGc---GGUGG--CC-CCGGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 32438 0.68 0.131261
Target:  5'- ---aCGUCACCGGccuugaaGCCGCgUGCGGCg -3'
miRNA:   3'- cucgGCGGUGGCCc------CGGUGgACGCCG- -5'
22256 5' -66 NC_005045.1 + 32572 0.66 0.175218
Target:  5'- aAGCCGCU-CCaGGGcaucGCCGCCaagGUGGCu -3'
miRNA:   3'- cUCGGCGGuGG-CCC----CGGUGGa--CGCCG- -5'
22256 5' -66 NC_005045.1 + 34807 0.68 0.127813
Target:  5'- -uGCCGUugagCACCGGgacGGCCugcuuACCUGCGuGCa -3'
miRNA:   3'- cuCGGCG----GUGGCC---CCGG-----UGGACGC-CG- -5'
22256 5' -66 NC_005045.1 + 35441 0.7 0.092515
Target:  5'- cAGCCGCCACCGGcGaUAUCgucaGCGGCg -3'
miRNA:   3'- cUCGGCGGUGGCCcCgGUGGa---CGCCG- -5'
22256 5' -66 NC_005045.1 + 37391 0.68 0.123456
Target:  5'- -cGCCGCCGCCGGGaCCGggauuauccagguuCCUGCa-- -3'
miRNA:   3'- cuCGGCGGUGGCCCcGGU--------------GGACGccg -5'
22256 5' -66 NC_005045.1 + 38953 0.67 0.15789
Target:  5'- -cGCCGCCcuCCaGGGCUACCg--GGCu -3'
miRNA:   3'- cuCGGCGGu-GGcCCCGGUGGacgCCG- -5'
22256 5' -66 NC_005045.1 + 40586 0.66 0.179808
Target:  5'- aGGGCaGCCGCCaGGGCUgcGCCgcgcaGgGGCu -3'
miRNA:   3'- -CUCGgCGGUGGcCCCGG--UGGa----CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.