miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22256 5' -66 NC_005045.1 + 5623 0.69 0.121167
Target:  5'- -cGCgGCgCAucuCCGGGGUCACCUGgGaGCc -3'
miRNA:   3'- cuCGgCG-GU---GGCCCCGGUGGACgC-CG- -5'
22256 5' -66 NC_005045.1 + 34807 0.68 0.127813
Target:  5'- -uGCCGUugagCACCGGgacGGCCugcuuACCUGCGuGCa -3'
miRNA:   3'- cuCGGCG----GUGGCC---CCGG-----UGGACGC-CG- -5'
22256 5' -66 NC_005045.1 + 32438 0.68 0.131261
Target:  5'- ---aCGUCACCGGccuugaaGCCGCgUGCGGCg -3'
miRNA:   3'- cucgGCGGUGGCCc------CGGUGgACGCCG- -5'
22256 5' -66 NC_005045.1 + 3243 0.68 0.145926
Target:  5'- cAGCC-CCACgCGGuGGCCGa-UGCGGUa -3'
miRNA:   3'- cUCGGcGGUG-GCC-CCGGUggACGCCG- -5'
22256 5' -66 NC_005045.1 + 25838 0.67 0.170291
Target:  5'- -cGCCGCCACCGGcugaaGCUacgcuugGCCUG-GGUg -3'
miRNA:   3'- cuCGGCGGUGGCCc----CGG-------UGGACgCCG- -5'
22256 5' -66 NC_005045.1 + 40586 0.66 0.179808
Target:  5'- aGGGCaGCCGCCaGGGCUgcGCCgcgcaGgGGCu -3'
miRNA:   3'- -CUCGgCGGUGGcCCCGG--UGGa----CgCCG- -5'
22256 5' -66 NC_005045.1 + 22234 0.66 0.19422
Target:  5'- -cGCUGCCcgaACCGGacagguuGCgGCCUGCGcGCa -3'
miRNA:   3'- cuCGGCGG---UGGCCc------CGgUGGACGC-CG- -5'
22256 5' -66 NC_005045.1 + 21126 0.69 0.114844
Target:  5'- cAGgCGCCGCCGGccaacuGGCCAUC-GCGGa -3'
miRNA:   3'- cUCgGCGGUGGCC------CCGGUGGaCGCCg -5'
22256 5' -66 NC_005045.1 + 16755 0.69 0.113923
Target:  5'- uGGCCGaCCacguugcccacggcGCCGGGGaacuuccggaCCACCUcaGCGGCc -3'
miRNA:   3'- cUCGGC-GG--------------UGGCCCC----------GGUGGA--CGCCG- -5'
22256 5' -66 NC_005045.1 + 15063 1.1 0.000053
Target:  5'- gGAGCCGCCACCGGGGCCACCUGCGGCa -3'
miRNA:   3'- -CUCGGCGGUGGCCCCGGUGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 15018 0.78 0.02091
Target:  5'- uGGGCCucggcaguaccuaCCACCGGGGCggcgacauucgcCACCUGCGGCa -3'
miRNA:   3'- -CUCGGc------------GGUGGCCCCG------------GUGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 27266 0.78 0.022376
Target:  5'- -uGCCGCCACCGGGGaCCacgGCCUGauacuucuUGGCg -3'
miRNA:   3'- cuCGGCGGUGGCCCC-GG---UGGAC--------GCCG- -5'
22256 5' -66 NC_005045.1 + 23484 0.73 0.056411
Target:  5'- cAGCCggcggaGCUACCGGGGCCggcugagcggguGCUUGCGGa -3'
miRNA:   3'- cUCGG------CGGUGGCCCCGG------------UGGACGCCg -5'
22256 5' -66 NC_005045.1 + 29521 0.71 0.085022
Target:  5'- uGAGCUGCCgggacaguucgucGCCGGuGGCCugaGCCUGCacagccuuGGCc -3'
miRNA:   3'- -CUCGGCGG-------------UGGCC-CCGG---UGGACG--------CCG- -5'
22256 5' -66 NC_005045.1 + 32273 0.7 0.097678
Target:  5'- aGAGCaccCGCCAcgauguagguuCCGGcauccacgucGGCC-CCUGCGGCa -3'
miRNA:   3'- -CUCG---GCGGU-----------GGCC----------CCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 16452 0.69 0.10883
Target:  5'- -cGCCGCUuuacguUUGGcGGCUGCCUGcCGGCg -3'
miRNA:   3'- cuCGGCGGu-----GGCC-CCGGUGGAC-GCCG- -5'
22256 5' -66 NC_005045.1 + 32343 0.69 0.111799
Target:  5'- cGGuuG-CGuuGGGGCC-UCUGCGGCa -3'
miRNA:   3'- cUCggCgGUggCCCCGGuGGACGCCG- -5'
22256 5' -66 NC_005045.1 + 9878 0.66 0.19422
Target:  5'- cGGGCCGCCuuCGGGGUCggGCCaGuuGUa -3'
miRNA:   3'- -CUCGGCGGugGCCCCGG--UGGaCgcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.