miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22259 3' -59.1 NC_005045.1 + 18275 0.66 0.469128
Target:  5'- gCCGGAGCu-UgGCugCCGGCCC-CGc -3'
miRNA:   3'- -GGUCUCGcuGgUGugGGUCGGGaGCu -5'
22259 3' -59.1 NC_005045.1 + 5651 0.66 0.469128
Target:  5'- gCguGGGCGA--AUGCCCGGCUCUUGGc -3'
miRNA:   3'- -GguCUCGCUggUGUGGGUCGGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 40341 0.66 0.459246
Target:  5'- uCCuuuuGGGCGGCCcuugcgacGCuCCCGGCCCaugcCGAg -3'
miRNA:   3'- -GGu---CUCGCUGG--------UGuGGGUCGGGa---GCU- -5'
22259 3' -59.1 NC_005045.1 + 35351 0.66 0.439822
Target:  5'- cCCGGA-UGuCCGC-CCCGGUCUUCGGg -3'
miRNA:   3'- -GGUCUcGCuGGUGuGGGUCGGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 32625 0.66 0.439822
Target:  5'- cCUGGAGCGGCUuagGCACCuCGGCgugggUCUUGAg -3'
miRNA:   3'- -GGUCUCGCUGG---UGUGG-GUCG-----GGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 10138 0.66 0.439822
Target:  5'- --cGGGCG-CCGCuuCCCuGCCCUgGAc -3'
miRNA:   3'- gguCUCGCuGGUGu-GGGuCGGGAgCU- -5'
22259 3' -59.1 NC_005045.1 + 8881 0.66 0.434086
Target:  5'- uCCAGGGCGAgaaucucacccacggUCAUACCCAggGCCgC-CGAg -3'
miRNA:   3'- -GGUCUCGCU---------------GGUGUGGGU--CGG-GaGCU- -5'
22259 3' -59.1 NC_005045.1 + 33334 0.66 0.430286
Target:  5'- aCCGGuucuucAGUGAggccgaccuCCugGCCCAGCCCggaGAg -3'
miRNA:   3'- -GGUC------UCGCU---------GGugUGGGUCGGGag-CU- -5'
22259 3' -59.1 NC_005045.1 + 37743 0.67 0.420874
Target:  5'- -aGGAGUGG-CACGCCgAGCUaCUCGAa -3'
miRNA:   3'- ggUCUCGCUgGUGUGGgUCGG-GAGCU- -5'
22259 3' -59.1 NC_005045.1 + 12433 0.67 0.411587
Target:  5'- uUCAGcaccAGCGGCgACGCCCucaaGGCUCUgGAg -3'
miRNA:   3'- -GGUC----UCGCUGgUGUGGG----UCGGGAgCU- -5'
22259 3' -59.1 NC_005045.1 + 29055 0.67 0.402427
Target:  5'- gCCAGcgaucuGCuGACCgGCACCCAggauGCCgUCGAg -3'
miRNA:   3'- -GGUCu-----CG-CUGG-UGUGGGU----CGGgAGCU- -5'
22259 3' -59.1 NC_005045.1 + 12116 0.67 0.402427
Target:  5'- uCCAuc-CGGCCaucuucguacgGCACCCGGCCCUUGu -3'
miRNA:   3'- -GGUcucGCUGG-----------UGUGGGUCGGGAGCu -5'
22259 3' -59.1 NC_005045.1 + 2912 0.67 0.402427
Target:  5'- gUCGGcugcguugcAGCGGCC-CGCCgGGUCCUUGGg -3'
miRNA:   3'- -GGUC---------UCGCUGGuGUGGgUCGGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 6740 0.67 0.393398
Target:  5'- gCCAGAG-GaACCACugCCaccAGUUCUCGGc -3'
miRNA:   3'- -GGUCUCgC-UGGUGugGG---UCGGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 11095 0.68 0.367113
Target:  5'- aCCAGGGCGcagauACUAUcccCCCAGCCCaaGGg -3'
miRNA:   3'- -GGUCUCGC-----UGGUGu--GGGUCGGGagCU- -5'
22259 3' -59.1 NC_005045.1 + 17431 0.68 0.350274
Target:  5'- gCCGGucuGCGuauGCACCCAGCCUUCc- -3'
miRNA:   3'- -GGUCu--CGCuggUGUGGGUCGGGAGcu -5'
22259 3' -59.1 NC_005045.1 + 8614 0.68 0.33399
Target:  5'- -aAGGGCcuCCACGCCgGGgCCUCGGu -3'
miRNA:   3'- ggUCUCGcuGGUGUGGgUCgGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 31724 0.69 0.318269
Target:  5'- aUCGuAGCgGACCaggaACugCCGGCCCUUGAc -3'
miRNA:   3'- -GGUcUCG-CUGG----UGugGGUCGGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 4440 0.69 0.295741
Target:  5'- aCCAGuGUG-CCGCGCUUAG-CCUCGGg -3'
miRNA:   3'- -GGUCuCGCuGGUGUGGGUCgGGAGCU- -5'
22259 3' -59.1 NC_005045.1 + 11586 0.69 0.288512
Target:  5'- aUCAGAcGUGGCUGUACCCGGCaCUCGAc -3'
miRNA:   3'- -GGUCU-CGCUGGUGUGGGUCGgGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.