Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22267 | 5' | -56 | NC_005045.1 | + | 25915 | 1.14 | 0.00023 |
Target: 5'- gGCACCUGCUGGCUCACACCCAUCAGCa -3' miRNA: 3'- -CGUGGACGACCGAGUGUGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 33804 | 0.74 | 0.195333 |
Target: 5'- aCACCUGCuucccUGGCccgUugGCCCAUCAGa -3' miRNA: 3'- cGUGGACG-----ACCGa--GugUGGGUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 39299 | 0.72 | 0.248898 |
Target: 5'- gGCACCcgugGCUgGGCggCugACCCG-CAGCg -3' miRNA: 3'- -CGUGGa---CGA-CCGa-GugUGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 39658 | 0.72 | 0.254876 |
Target: 5'- uCAUCUGCUGGaguggugcccagcCUC-CAgCCAUCAGCg -3' miRNA: 3'- cGUGGACGACC-------------GAGuGUgGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 666 | 0.72 | 0.276368 |
Target: 5'- uCGCCUGCUcGG-UCGCACCUG-CGGCg -3' miRNA: 3'- cGUGGACGA-CCgAGUGUGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 5812 | 0.71 | 0.283603 |
Target: 5'- gGCACaaGCUGGC-CGCuACCCGcgccucuagaUCGGCa -3' miRNA: 3'- -CGUGgaCGACCGaGUG-UGGGU----------AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 13250 | 0.71 | 0.283603 |
Target: 5'- gGCGCCUGCcGGCaUCugGUCC-UCGGCc -3' miRNA: 3'- -CGUGGACGaCCG-AGugUGGGuAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 33848 | 0.71 | 0.298521 |
Target: 5'- cGCcCCUggGCUGGCcCGCcgAgCCAUCAGCg -3' miRNA: 3'- -CGuGGA--CGACCGaGUG--UgGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 14327 | 0.71 | 0.306206 |
Target: 5'- -gGCCUGCgGGUUCACGucgcCCCA-CAGUg -3' miRNA: 3'- cgUGGACGaCCGAGUGU----GGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 5303 | 0.71 | 0.306206 |
Target: 5'- uGCcCgCUGCUGGCaCACGgCCAgggCAGCu -3' miRNA: 3'- -CGuG-GACGACCGaGUGUgGGUa--GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 29354 | 0.71 | 0.310888 |
Target: 5'- aGCGCCUGUagggcaucguuggGGUUCAUGCCC-UCGGUc -3' miRNA: 3'- -CGUGGACGa------------CCGAGUGUGGGuAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 4067 | 0.71 | 0.314041 |
Target: 5'- -gGCCUGCUGGCagGCGCCUgcuacugcAUC-GCa -3' miRNA: 3'- cgUGGACGACCGagUGUGGG--------UAGuCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 7119 | 0.71 | 0.322026 |
Target: 5'- gGCucuCCUGCUGGC-CAguuCGCCUcgCGGUg -3' miRNA: 3'- -CGu--GGACGACCGaGU---GUGGGuaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 38829 | 0.7 | 0.330162 |
Target: 5'- -gACCUGCUGGCguaccuGCGCCCcgaGGCc -3' miRNA: 3'- cgUGGACGACCGag----UGUGGGuagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 42210 | 0.7 | 0.355473 |
Target: 5'- --cCCUGCggUGGCgUgGCuGCCCAUCGGCu -3' miRNA: 3'- cguGGACG--ACCG-AgUG-UGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 147 | 0.7 | 0.355473 |
Target: 5'- --cCCUGCggUGGCgUgGCuGCCCAUCGGCu -3' miRNA: 3'- cguGGACG--ACCG-AgUG-UGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 26170 | 0.7 | 0.364208 |
Target: 5'- uGCACCa---GGggCugACCCAUCAGCa -3' miRNA: 3'- -CGUGGacgaCCgaGugUGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 16903 | 0.7 | 0.373091 |
Target: 5'- uGCACCUGCUGGUg---GCCCugcacaAGCu -3' miRNA: 3'- -CGUGGACGACCGagugUGGGuag---UCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 4045 | 0.69 | 0.410063 |
Target: 5'- uGUACgUaCUcGCUCACGCCCAggCGGCg -3' miRNA: 3'- -CGUGgAcGAcCGAGUGUGGGUa-GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 42267 | 0.69 | 0.41869 |
Target: 5'- aGCGCCaGCcuacggucuucccUGGCUCugGCCCuggCuGCu -3' miRNA: 3'- -CGUGGaCG-------------ACCGAGugUGGGua-GuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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