Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22267 | 5' | -56 | NC_005045.1 | + | 39299 | 0.72 | 0.248898 |
Target: 5'- gGCACCcgugGCUgGGCggCugACCCG-CAGCg -3' miRNA: 3'- -CGUGGa---CGA-CCGa-GugUGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 34494 | 0.67 | 0.499874 |
Target: 5'- -aGCUUGCUGaGCUgGCcacgaugGCCCAcCGGCa -3' miRNA: 3'- cgUGGACGAC-CGAgUG-------UGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 32133 | 0.67 | 0.500935 |
Target: 5'- gGCugCUGCUGGCggCGCuggGCaaGUCGGg -3' miRNA: 3'- -CGugGACGACCGa-GUG---UGggUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 566 | 0.67 | 0.522347 |
Target: 5'- uCGCCUcCUGGCUC-UACCUGUC-GCu -3' miRNA: 3'- cGUGGAcGACCGAGuGUGGGUAGuCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 11605 | 0.67 | 0.533187 |
Target: 5'- gGCACUcgacgaGCUGGCUCcgaaguacggcgGCACCCAcaagguggaCGGCa -3' miRNA: 3'- -CGUGGa-----CGACCGAG------------UGUGGGUa--------GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 18780 | 0.67 | 0.533187 |
Target: 5'- aGCACCaugUGCUGGUacgcCGCACCa---AGCa -3' miRNA: 3'- -CGUGG---ACGACCGa---GUGUGGguagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 10945 | 0.66 | 0.566149 |
Target: 5'- cGCuGCCUGCUGGCagAUAUCCAc---- -3' miRNA: 3'- -CG-UGGACGACCGagUGUGGGUagucg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 41662 | 0.66 | 0.566149 |
Target: 5'- cGCACCggcggGCUGaGCUUcaGCCCGUCc-- -3' miRNA: 3'- -CGUGGa----CGAC-CGAGugUGGGUAGucg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 26683 | 0.66 | 0.599613 |
Target: 5'- cGgACCUGCcGGcCUUGCugCCgggaGUCGGUg -3' miRNA: 3'- -CgUGGACGaCC-GAGUGugGG----UAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 28710 | 0.68 | 0.479918 |
Target: 5'- -gGCCUGCUGGgUCAgAagaguaCCA-CGGCg -3' miRNA: 3'- cgUGGACGACCgAGUgUg-----GGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 39202 | 0.68 | 0.449229 |
Target: 5'- gGCGCgUuauggcGaCUGGCUCGCACCCucuAUCcuGGCg -3' miRNA: 3'- -CGUGgA------C-GACCGAGUGUGGG---UAG--UCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 42267 | 0.69 | 0.41869 |
Target: 5'- aGCGCCaGCcuacggucuucccUGGCUCugGCCCuggCuGCu -3' miRNA: 3'- -CGUGGaCG-------------ACCGAGugUGGGua-GuCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 666 | 0.72 | 0.276368 |
Target: 5'- uCGCCUGCUcGG-UCGCACCUG-CGGCg -3' miRNA: 3'- cGUGGACGA-CCgAGUGUGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 33848 | 0.71 | 0.298521 |
Target: 5'- cGCcCCUggGCUGGCcCGCcgAgCCAUCAGCg -3' miRNA: 3'- -CGuGGA--CGACCGaGUG--UgGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 4067 | 0.71 | 0.314041 |
Target: 5'- -gGCCUGCUGGCagGCGCCUgcuacugcAUC-GCa -3' miRNA: 3'- cgUGGACGACCGagUGUGGG--------UAGuCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 38829 | 0.7 | 0.330162 |
Target: 5'- -gACCUGCUGGCguaccuGCGCCCcgaGGCc -3' miRNA: 3'- cgUGGACGACCGag----UGUGGGuagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 147 | 0.7 | 0.355473 |
Target: 5'- --cCCUGCggUGGCgUgGCuGCCCAUCGGCu -3' miRNA: 3'- cguGGACG--ACCG-AgUG-UGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 42210 | 0.7 | 0.355473 |
Target: 5'- --cCCUGCggUGGCgUgGCuGCCCAUCGGCu -3' miRNA: 3'- cguGGACG--ACCG-AgUG-UGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 16903 | 0.7 | 0.373091 |
Target: 5'- uGCACCUGCUGGUg---GCCCugcacaAGCu -3' miRNA: 3'- -CGUGGACGACCGagugUGGGuag---UCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 204 | 0.69 | 0.41869 |
Target: 5'- aGCGCCaGCcuacggucuucccUGGCUCugGCCCuggCuGCu -3' miRNA: 3'- -CGUGGaCG-------------ACCGAGugUGGGua-GuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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