miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22267 5' -56 NC_005045.1 + 147 0.7 0.355473
Target:  5'- --cCCUGCggUGGCgUgGCuGCCCAUCGGCu -3'
miRNA:   3'- cguGGACG--ACCG-AgUG-UGGGUAGUCG- -5'
22267 5' -56 NC_005045.1 + 204 0.69 0.41869
Target:  5'- aGCGCCaGCcuacggucuucccUGGCUCugGCCCuggCuGCu -3'
miRNA:   3'- -CGUGGaCG-------------ACCGAGugUGGGua-GuCG- -5'
22267 5' -56 NC_005045.1 + 566 0.67 0.522347
Target:  5'- uCGCCUcCUGGCUC-UACCUGUC-GCu -3'
miRNA:   3'- cGUGGAcGACCGAGuGUGGGUAGuCG- -5'
22267 5' -56 NC_005045.1 + 666 0.72 0.276368
Target:  5'- uCGCCUGCUcGG-UCGCACCUG-CGGCg -3'
miRNA:   3'- cGUGGACGA-CCgAGUGUGGGUaGUCG- -5'
22267 5' -56 NC_005045.1 + 4045 0.69 0.410063
Target:  5'- uGUACgUaCUcGCUCACGCCCAggCGGCg -3'
miRNA:   3'- -CGUGgAcGAcCGAGUGUGGGUa-GUCG- -5'
22267 5' -56 NC_005045.1 + 4067 0.71 0.314041
Target:  5'- -gGCCUGCUGGCagGCGCCUgcuacugcAUC-GCa -3'
miRNA:   3'- cgUGGACGACCGagUGUGGG--------UAGuCG- -5'
22267 5' -56 NC_005045.1 + 5303 0.71 0.306206
Target:  5'- uGCcCgCUGCUGGCaCACGgCCAgggCAGCu -3'
miRNA:   3'- -CGuG-GACGACCGaGUGUgGGUa--GUCG- -5'
22267 5' -56 NC_005045.1 + 5812 0.71 0.283603
Target:  5'- gGCACaaGCUGGC-CGCuACCCGcgccucuagaUCGGCa -3'
miRNA:   3'- -CGUGgaCGACCGaGUG-UGGGU----------AGUCG- -5'
22267 5' -56 NC_005045.1 + 7119 0.71 0.322026
Target:  5'- gGCucuCCUGCUGGC-CAguuCGCCUcgCGGUg -3'
miRNA:   3'- -CGu--GGACGACCGaGU---GUGGGuaGUCG- -5'
22267 5' -56 NC_005045.1 + 10945 0.66 0.566149
Target:  5'- cGCuGCCUGCUGGCagAUAUCCAc---- -3'
miRNA:   3'- -CG-UGGACGACCGagUGUGGGUagucg -5'
22267 5' -56 NC_005045.1 + 11605 0.67 0.533187
Target:  5'- gGCACUcgacgaGCUGGCUCcgaaguacggcgGCACCCAcaagguggaCGGCa -3'
miRNA:   3'- -CGUGGa-----CGACCGAG------------UGUGGGUa--------GUCG- -5'
22267 5' -56 NC_005045.1 + 11610 0.66 0.588417
Target:  5'- -gGCCUGCUGGg-UACACCagaccCGGCc -3'
miRNA:   3'- cgUGGACGACCgaGUGUGGgua--GUCG- -5'
22267 5' -56 NC_005045.1 + 13250 0.71 0.283603
Target:  5'- gGCGCCUGCcGGCaUCugGUCC-UCGGCc -3'
miRNA:   3'- -CGUGGACGaCCG-AGugUGGGuAGUCG- -5'
22267 5' -56 NC_005045.1 + 14327 0.71 0.306206
Target:  5'- -gGCCUGCgGGUUCACGucgcCCCA-CAGUg -3'
miRNA:   3'- cgUGGACGaCCGAGUGU----GGGUaGUCG- -5'
22267 5' -56 NC_005045.1 + 16610 0.67 0.515886
Target:  5'- aGCA-CUGCcGGCUCAC-CUCAccgaagcgggauugcUCGGCa -3'
miRNA:   3'- -CGUgGACGaCCGAGUGuGGGU---------------AGUCG- -5'
22267 5' -56 NC_005045.1 + 16903 0.7 0.373091
Target:  5'- uGCACCUGCUGGUg---GCCCugcacaAGCu -3'
miRNA:   3'- -CGUGGACGACCGagugUGGGuag---UCG- -5'
22267 5' -56 NC_005045.1 + 18780 0.67 0.533187
Target:  5'- aGCACCaugUGCUGGUacgcCGCACCa---AGCa -3'
miRNA:   3'- -CGUGG---ACGACCGa---GUGUGGguagUCG- -5'
22267 5' -56 NC_005045.1 + 20540 0.67 0.489324
Target:  5'- uGCACUUGCuccuaugUGGgUgACAuaauCCUAUCAGCa -3'
miRNA:   3'- -CGUGGACG-------ACCgAgUGU----GGGUAGUCG- -5'
22267 5' -56 NC_005045.1 + 22577 0.68 0.479918
Target:  5'- cGCGCCacCUGGCacgUAuCGCCCAucUCGGCg -3'
miRNA:   3'- -CGUGGacGACCGa--GU-GUGGGU--AGUCG- -5'
22267 5' -56 NC_005045.1 + 23102 0.68 0.478878
Target:  5'- cGCgGCCUGCUGacgcugcuGCUC-CGCCUcugccuguagcucGUCGGCg -3'
miRNA:   3'- -CG-UGGACGAC--------CGAGuGUGGG-------------UAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.