Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22267 | 5' | -56 | NC_005045.1 | + | 33804 | 0.74 | 0.195333 |
Target: 5'- aCACCUGCuucccUGGCccgUugGCCCAUCAGa -3' miRNA: 3'- cGUGGACG-----ACCGa--GugUGGGUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 24703 | 0.67 | 0.533187 |
Target: 5'- gGCAgCUUGCuUGGCggUCAgGCCgGUCAGg -3' miRNA: 3'- -CGU-GGACG-ACCG--AGUgUGGgUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 33604 | 0.66 | 0.57726 |
Target: 5'- cGCACgUGCcgucaGGCcaACGCCCugcUCAGCc -3' miRNA: 3'- -CGUGgACGa----CCGagUGUGGGu--AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 11610 | 0.66 | 0.588417 |
Target: 5'- -gGCCUGCUGGg-UACACCagaccCGGCc -3' miRNA: 3'- cgUGGACGACCgaGUGUGGgua--GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 14327 | 0.71 | 0.306206 |
Target: 5'- -gGCCUGCgGGUUCACGucgcCCCA-CAGUg -3' miRNA: 3'- cgUGGACGaCCGAGUGU----GGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 5303 | 0.71 | 0.306206 |
Target: 5'- uGCcCgCUGCUGGCaCACGgCCAgggCAGCu -3' miRNA: 3'- -CGuG-GACGACCGaGUGUgGGUa--GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 7119 | 0.71 | 0.322026 |
Target: 5'- gGCucuCCUGCUGGC-CAguuCGCCUcgCGGUg -3' miRNA: 3'- -CGu--GGACGACCGaGU---GUGGGuaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 26170 | 0.7 | 0.364208 |
Target: 5'- uGCACCa---GGggCugACCCAUCAGCa -3' miRNA: 3'- -CGUGGacgaCCgaGugUGGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 23102 | 0.68 | 0.478878 |
Target: 5'- cGCgGCCUGCUGacgcugcuGCUC-CGCCUcugccuguagcucGUCGGCg -3' miRNA: 3'- -CG-UGGACGAC--------CGAGuGUGGG-------------UAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 16610 | 0.67 | 0.515886 |
Target: 5'- aGCA-CUGCcGGCUCAC-CUCAccgaagcgggauugcUCGGCa -3' miRNA: 3'- -CGUgGACGaCCGAGUGuGGGU---------------AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 22577 | 0.68 | 0.479918 |
Target: 5'- cGCGCCacCUGGCacgUAuCGCCCAucUCGGCg -3' miRNA: 3'- -CGUGGacGACCGa--GU-GUGGGU--AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 34077 | 0.68 | 0.433311 |
Target: 5'- aGCGCCUGCcGGaUgaaugccguguccgcUACACCCAUCGcGCc -3' miRNA: 3'- -CGUGGACGaCCgA---------------GUGUGGGUAGU-CG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 39658 | 0.72 | 0.254876 |
Target: 5'- uCAUCUGCUGGaguggugcccagcCUC-CAgCCAUCAGCg -3' miRNA: 3'- cGUGGACGACC-------------GAGuGUgGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 20540 | 0.67 | 0.489324 |
Target: 5'- uGCACUUGCuccuaugUGGgUgACAuaauCCUAUCAGCa -3' miRNA: 3'- -CGUGGACG-------ACCgAgUGU----GGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 5812 | 0.71 | 0.283603 |
Target: 5'- gGCACaaGCUGGC-CGCuACCCGcgccucuagaUCGGCa -3' miRNA: 3'- -CGUGgaCGACCGaGUG-UGGGU----------AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 4045 | 0.69 | 0.410063 |
Target: 5'- uGUACgUaCUcGCUCACGCCCAggCGGCg -3' miRNA: 3'- -CGUGgAcGAcCGAGUGUGGGUa-GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 25586 | 0.67 | 0.490374 |
Target: 5'- uCACCggUGUUGGCaucUCGCACCCccaGGCc -3' miRNA: 3'- cGUGG--ACGACCG---AGUGUGGGuagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 24868 | 0.66 | 0.566149 |
Target: 5'- cGCACCgguUGcCUGGUacUCgACGuuCAUCAGCu -3' miRNA: 3'- -CGUGG---AC-GACCG--AG-UGUggGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 13250 | 0.71 | 0.283603 |
Target: 5'- gGCGCCUGCcGGCaUCugGUCC-UCGGCc -3' miRNA: 3'- -CGUGGACGaCCG-AGugUGGGuAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 29354 | 0.71 | 0.310888 |
Target: 5'- aGCGCCUGUagggcaucguuggGGUUCAUGCCC-UCGGUc -3' miRNA: 3'- -CGUGGACGa------------CCGAGUGUGGGuAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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