Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22269 | 3' | -57.5 | NC_005045.1 | + | 28637 | 0.68 | 0.415349 |
Target: 5'- -gGGCCACcgcaucgacggAUGCACCcuugacgccgaacGCCCCGGCCu- -3' miRNA: 3'- ggCUGGUG-----------UAUGUGG-------------CGGGGCUGGug -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 27966 | 1.12 | 0.000329 |
Target: 5'- gCCGACCACAUACACCGCCCCGACCACg -3' miRNA: 3'- -GGCUGGUGUAUGUGGCGGGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 26329 | 0.66 | 0.52494 |
Target: 5'- aCG-CCACGgGCACCaccuacaGCCacaCGGCCACu -3' miRNA: 3'- gGCuGGUGUaUGUGG-------CGGg--GCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 25972 | 0.7 | 0.313973 |
Target: 5'- aCCuGCUGCAUACcgACCaGCCCUGGCCGa -3' miRNA: 3'- -GGcUGGUGUAUG--UGG-CGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 25726 | 0.68 | 0.444866 |
Target: 5'- aCUGucCCGCAUGCAcacCCGaUCCCGuCCGCu -3' miRNA: 3'- -GGCu-GGUGUAUGU---GGC-GGGGCuGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 24669 | 0.73 | 0.200157 |
Target: 5'- aUCGuCCGCAUGCACCGCCgcgucgucgagaccuUcauCGACCGCg -3' miRNA: 3'- -GGCuGGUGUAUGUGGCGG---------------G---GCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 24295 | 0.67 | 0.484618 |
Target: 5'- gCGACCugcguggcucgaACGUGguCCGCCUgGAUCGCc -3' miRNA: 3'- gGCUGG------------UGUAUguGGCGGGgCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23432 | 0.71 | 0.27042 |
Target: 5'- uUGACCuGCGgcagGCACCGCCaCCGGCUg- -3' miRNA: 3'- gGCUGG-UGUa---UGUGGCGG-GGCUGGug -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23391 | 0.66 | 0.547176 |
Target: 5'- cCCGuuguuCCGCAaGCACCcgcucagccgGCCCCGGuagcuCCGCc -3' miRNA: 3'- -GGCu----GGUGUaUGUGG----------CGGGGCU-----GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23309 | 0.68 | 0.407007 |
Target: 5'- cCCGACCcaGCAgccGCAacCUGUUCCGACCAg -3' miRNA: 3'- -GGCUGG--UGUa--UGU--GGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23198 | 0.75 | 0.159699 |
Target: 5'- cCCGGCUGCc-GCGCCGaCCCCGaACCAUg -3' miRNA: 3'- -GGCUGGUGuaUGUGGC-GGGGC-UGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 22533 | 0.68 | 0.407007 |
Target: 5'- aUCGACUACc-GCACCcuugGCCUCGuCCACg -3' miRNA: 3'- -GGCUGGUGuaUGUGG----CGGGGCuGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 22323 | 0.67 | 0.484618 |
Target: 5'- gCCGACCugGaACcUCGCCCCuggcGAgCACu -3' miRNA: 3'- -GGCUGGugUaUGuGGCGGGG----CUgGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 21507 | 0.66 | 0.536547 |
Target: 5'- gCCGauGCCACugGCACCgGCaCUCGACgACg -3' miRNA: 3'- -GGC--UGGUGuaUGUGG-CG-GGGCUGgUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 20212 | 0.67 | 0.505122 |
Target: 5'- gCC-ACCugGgACugACCGCCCUGGCCuGCg -3' miRNA: 3'- -GGcUGGugUaUG--UGGCGGGGCUGG-UG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 19244 | 0.66 | 0.536547 |
Target: 5'- aCGugCAUcgggaaGUACACUGCCuuG-CCAUg -3' miRNA: 3'- gGCugGUG------UAUGUGGCGGggCuGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18786 | 0.68 | 0.425686 |
Target: 5'- aUGugCugGUACGCCGCaCCaagcaccaGACCAa -3' miRNA: 3'- gGCugGugUAUGUGGCG-GGg-------CUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18748 | 0.68 | 0.444866 |
Target: 5'- uCCGGCCAgG---GCCGCCCCaggucauuGCCGCc -3' miRNA: 3'- -GGCUGGUgUaugUGGCGGGGc-------UGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18698 | 0.69 | 0.379093 |
Target: 5'- cCUGGCCggaGCGUgaugcugGCGCCGCCgCGACCc- -3' miRNA: 3'- -GGCUGG---UGUA-------UGUGGCGGgGCUGGug -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18127 | 0.7 | 0.313973 |
Target: 5'- gCgGGCguCGUucuGCGCCGCCCCGACa-- -3' miRNA: 3'- -GgCUGguGUA---UGUGGCGGGGCUGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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