miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 28807 0.66 0.545045
Target:  5'- aCCGGCCACcagcggggacCGuuGCCCCG-CCGu -3'
miRNA:   3'- -GGCUGGUGuau-------GUggCGGGGCuGGUg -5'
22269 3' -57.5 NC_005045.1 + 27966 1.12 0.000329
Target:  5'- gCCGACCACAUACACCGCCCCGACCACg -3'
miRNA:   3'- -GGCUGGUGUAUGUGGCGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 24295 0.67 0.484618
Target:  5'- gCGACCugcguggcucgaACGUGguCCGCCUgGAUCGCc -3'
miRNA:   3'- gGCUGG------------UGUAUguGGCGGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 14144 0.67 0.494822
Target:  5'- cCCGGCgG---GCACCGCCaUgGGCCGCu -3'
miRNA:   3'- -GGCUGgUguaUGUGGCGG-GgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 13494 0.71 0.298889
Target:  5'- aCCGacuGCCACAaggACACCGCCgCCGAggUCAa -3'
miRNA:   3'- -GGC---UGGUGUa--UGUGGCGG-GGCU--GGUg -5'
22269 3' -57.5 NC_005045.1 + 20212 0.67 0.505122
Target:  5'- gCC-ACCugGgACugACCGCCCUGGCCuGCg -3'
miRNA:   3'- -GGcUGGugUaUG--UGGCGGGGCUGG-UG- -5'
22269 3' -57.5 NC_005045.1 + 22323 0.67 0.484618
Target:  5'- gCCGACCugGaACcUCGCCCCuggcGAgCACu -3'
miRNA:   3'- -GGCUGGugUaUGuGGCGGGG----CUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 2192 0.67 0.474516
Target:  5'- cCUGACCACuccACGCaGUgCCGGCUACc -3'
miRNA:   3'- -GGCUGGUGua-UGUGgCGgGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 25972 0.7 0.313973
Target:  5'- aCCuGCUGCAUACcgACCaGCCCUGGCCGa -3'
miRNA:   3'- -GGcUGGUGUAUG--UGG-CGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 30751 0.69 0.362631
Target:  5'- -aGACCAUcgGaACCGUCCUGGCCGa -3'
miRNA:   3'- ggCUGGUGuaUgUGGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 3617 0.69 0.362631
Target:  5'- gCCGACa----GCAUCGUCaCCGGCCACg -3'
miRNA:   3'- -GGCUGguguaUGUGGCGG-GGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 18698 0.69 0.379093
Target:  5'- cCUGGCCggaGCGUgaugcugGCGCCGCCgCGACCc- -3'
miRNA:   3'- -GGCUGG---UGUA-------UGUGGCGGgGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 23309 0.68 0.407007
Target:  5'- cCCGACCcaGCAgccGCAacCUGUUCCGACCAg -3'
miRNA:   3'- -GGCUGG--UGUa--UGU--GGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 33142 0.68 0.407007
Target:  5'- uCCGGuCCGaugcugACACgGCCCUGAgCCGCg -3'
miRNA:   3'- -GGCU-GGUgua---UGUGgCGGGGCU-GGUG- -5'
22269 3' -57.5 NC_005045.1 + 12160 0.68 0.435215
Target:  5'- aCCGACCAgGgugagugGCACUGgCCC-ACCAUc -3'
miRNA:   3'- -GGCUGGUgUa------UGUGGCgGGGcUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 41191 0.68 0.439061
Target:  5'- aCCGGCCugugccugcuGCugucguugacagccuGUGCaACCGCCCCGGcgcCCGCu -3'
miRNA:   3'- -GGCUGG----------UG---------------UAUG-UGGCGGGGCU---GGUG- -5'
22269 3' -57.5 NC_005045.1 + 14283 0.68 0.444866
Target:  5'- gCCGGuaacCCGCAaa-GCCGCCCgGACgACc -3'
miRNA:   3'- -GGCU----GGUGUaugUGGCGGGgCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 25726 0.68 0.444866
Target:  5'- aCUGucCCGCAUGCAcacCCGaUCCCGuCCGCu -3'
miRNA:   3'- -GGCu-GGUGUAUGU---GGC-GGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 4046 0.68 0.454635
Target:  5'- cUCGGCC-UGUACuGCUGCCUCGGCCuGCu -3'
miRNA:   3'- -GGCUGGuGUAUG-UGGCGGGGCUGG-UG- -5'
22269 3' -57.5 NC_005045.1 + 41390 0.67 0.46452
Target:  5'- gCUGGCCGUA-ACACCGgCCUGACCu- -3'
miRNA:   3'- -GGCUGGUGUaUGUGGCgGGGCUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.