miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 29543 0.65 0.52171
Target:  5'- uGCgCGACAaggUAGGCaugcaguuccuggCGGCCagccuggacaugaACCAGCGGg -3'
miRNA:   3'- -CG-GCUGUa--GUCUG-------------GCCGG-------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 33948 0.66 0.503104
Target:  5'- aGCgGGCGcgGGACagGGCUACCGGCa- -3'
miRNA:   3'- -CGgCUGUagUCUGg-CCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 26244 0.66 0.503104
Target:  5'- gGuuGGCGaugaaCAGGucaUCGGCCACCguGGCGGc -3'
miRNA:   3'- -CggCUGUa----GUCU---GGCCGGUGG--UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 6173 0.66 0.492892
Target:  5'- aGCCGACAgacGGCCucggucggGGCCACCgucAGCa- -3'
miRNA:   3'- -CGGCUGUaguCUGG--------CCGGUGG---UCGcc -5'
22272 3' -58.5 NC_005045.1 + 17912 0.66 0.476756
Target:  5'- cCCGuuCAUCgcGGACCagccuccucggucagGGCCACCucGGCGGc -3'
miRNA:   3'- cGGCu-GUAG--UCUGG---------------CCGGUGG--UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 38855 0.66 0.472763
Target:  5'- gGCCcGCAUgGGugaccguaccUCGGCCACCAGCu- -3'
miRNA:   3'- -CGGcUGUAgUCu---------GGCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 10365 0.66 0.472763
Target:  5'- uGCaGGCAcuUCAGcUCGGCCuuggUCAGCGGg -3'
miRNA:   3'- -CGgCUGU--AGUCuGGCCGGu---GGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 27505 0.66 0.472763
Target:  5'- gGCCGcCGccuggauguacUCAG-CCGGCC-CCGGCa- -3'
miRNA:   3'- -CGGCuGU-----------AGUCuGGCCGGuGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 15076 0.66 0.472763
Target:  5'- uUCGACggCAGcgggagccgccACCggGGCCACCuGCGGc -3'
miRNA:   3'- cGGCUGuaGUC-----------UGG--CCGGUGGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 10709 0.66 0.472763
Target:  5'- uCCGGCAcCGuGGCC-GCCACCGGCc- -3'
miRNA:   3'- cGGCUGUaGU-CUGGcCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 5976 0.66 0.472763
Target:  5'- uCCGGCAUCgcgcaGGGCaCGGuuuaCCGCCAGCu- -3'
miRNA:   3'- cGGCUGUAG-----UCUG-GCC----GGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 32250 0.66 0.472763
Target:  5'- uCCGGCAUCcacgUCGGCC-CCuGCGGc -3'
miRNA:   3'- cGGCUGUAGucu-GGCCGGuGGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 35285 0.66 0.471767
Target:  5'- -aCGGCAUCGGcuacacuGCCGGCC-UCGGCu- -3'
miRNA:   3'- cgGCUGUAGUC-------UGGCCGGuGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 6121 0.67 0.456962
Target:  5'- cGUCGucccaAUaCAGGCCGGCCcguugaccuaccuccACCAGcCGGg -3'
miRNA:   3'- -CGGCug---UA-GUCUGGCCGG---------------UGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 21119 0.67 0.453057
Target:  5'- cGCCGGC--CA-ACUGGCCAUC-GCGGa -3'
miRNA:   3'- -CGGCUGuaGUcUGGCCGGUGGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 5280 0.67 0.424361
Target:  5'- aGCCGACggCu--CCaGGCCGCCgAGCGc -3'
miRNA:   3'- -CGGCUGuaGucuGG-CCGGUGG-UCGCc -5'
22272 3' -58.5 NC_005045.1 + 4924 0.67 0.415039
Target:  5'- cGCCGGCGucuaUCAGguGCUGGuCCGCUucAGCGa -3'
miRNA:   3'- -CGGCUGU----AGUC--UGGCC-GGUGG--UCGCc -5'
22272 3' -58.5 NC_005045.1 + 38994 0.67 0.412267
Target:  5'- -aCGACAUCGagaccacgaagaacGGCCucaccGCCACCgAGCGGg -3'
miRNA:   3'- cgGCUGUAGU--------------CUGGc----CGGUGG-UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 28780 0.68 0.409507
Target:  5'- cGCCGugGUacucuucugacccagCAGGCCGGCCuuaGCCugAGCcuGGa -3'
miRNA:   3'- -CGGCugUA---------------GUCUGGCCGG---UGG--UCG--CC- -5'
22272 3' -58.5 NC_005045.1 + 34407 0.68 0.403111
Target:  5'- uGCCGcgugaGCAcCAGcUCGGCCccguugcacagcggGCCAGCGGc -3'
miRNA:   3'- -CGGC-----UGUaGUCuGGCCGG--------------UGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.