Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22272 | 3' | -58.5 | NC_005045.1 | + | 29543 | 0.65 | 0.52171 |
Target: 5'- uGCgCGACAaggUAGGCaugcaguuccuggCGGCCagccuggacaugaACCAGCGGg -3' miRNA: 3'- -CG-GCUGUa--GUCUG-------------GCCGG-------------UGGUCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 26244 | 0.66 | 0.503104 |
Target: 5'- gGuuGGCGaugaaCAGGucaUCGGCCACCguGGCGGc -3' miRNA: 3'- -CggCUGUa----GUCU---GGCCGGUGG--UCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 33948 | 0.66 | 0.503104 |
Target: 5'- aGCgGGCGcgGGACagGGCUACCGGCa- -3' miRNA: 3'- -CGgCUGUagUCUGg-CCGGUGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 6173 | 0.66 | 0.492892 |
Target: 5'- aGCCGACAgacGGCCucggucggGGCCACCgucAGCa- -3' miRNA: 3'- -CGGCUGUaguCUGG--------CCGGUGG---UCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 17912 | 0.66 | 0.476756 |
Target: 5'- cCCGuuCAUCgcGGACCagccuccucggucagGGCCACCucGGCGGc -3' miRNA: 3'- cGGCu-GUAG--UCUGG---------------CCGGUGG--UCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 38855 | 0.66 | 0.472763 |
Target: 5'- gGCCcGCAUgGGugaccguaccUCGGCCACCAGCu- -3' miRNA: 3'- -CGGcUGUAgUCu---------GGCCGGUGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 5976 | 0.66 | 0.472763 |
Target: 5'- uCCGGCAUCgcgcaGGGCaCGGuuuaCCGCCAGCu- -3' miRNA: 3'- cGGCUGUAG-----UCUG-GCC----GGUGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 10365 | 0.66 | 0.472763 |
Target: 5'- uGCaGGCAcuUCAGcUCGGCCuuggUCAGCGGg -3' miRNA: 3'- -CGgCUGU--AGUCuGGCCGGu---GGUCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 10709 | 0.66 | 0.472763 |
Target: 5'- uCCGGCAcCGuGGCC-GCCACCGGCc- -3' miRNA: 3'- cGGCUGUaGU-CUGGcCGGUGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 27505 | 0.66 | 0.472763 |
Target: 5'- gGCCGcCGccuggauguacUCAG-CCGGCC-CCGGCa- -3' miRNA: 3'- -CGGCuGU-----------AGUCuGGCCGGuGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 32250 | 0.66 | 0.472763 |
Target: 5'- uCCGGCAUCcacgUCGGCC-CCuGCGGc -3' miRNA: 3'- cGGCUGUAGucu-GGCCGGuGGuCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 15076 | 0.66 | 0.472763 |
Target: 5'- uUCGACggCAGcgggagccgccACCggGGCCACCuGCGGc -3' miRNA: 3'- cGGCUGuaGUC-----------UGG--CCGGUGGuCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 35285 | 0.66 | 0.471767 |
Target: 5'- -aCGGCAUCGGcuacacuGCCGGCC-UCGGCu- -3' miRNA: 3'- cgGCUGUAGUC-------UGGCCGGuGGUCGcc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 6121 | 0.67 | 0.456962 |
Target: 5'- cGUCGucccaAUaCAGGCCGGCCcguugaccuaccuccACCAGcCGGg -3' miRNA: 3'- -CGGCug---UA-GUCUGGCCGG---------------UGGUC-GCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 21119 | 0.67 | 0.453057 |
Target: 5'- cGCCGGC--CA-ACUGGCCAUC-GCGGa -3' miRNA: 3'- -CGGCUGuaGUcUGGCCGGUGGuCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 5280 | 0.67 | 0.424361 |
Target: 5'- aGCCGACggCu--CCaGGCCGCCgAGCGc -3' miRNA: 3'- -CGGCUGuaGucuGG-CCGGUGG-UCGCc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 4924 | 0.67 | 0.415039 |
Target: 5'- cGCCGGCGucuaUCAGguGCUGGuCCGCUucAGCGa -3' miRNA: 3'- -CGGCUGU----AGUC--UGGCC-GGUGG--UCGCc -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 38994 | 0.67 | 0.412267 |
Target: 5'- -aCGACAUCGagaccacgaagaacGGCCucaccGCCACCgAGCGGg -3' miRNA: 3'- cgGCUGUAGU--------------CUGGc----CGGUGG-UCGCC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 28780 | 0.68 | 0.409507 |
Target: 5'- cGCCGugGUacucuucugacccagCAGGCCGGCCuuaGCCugAGCcuGGa -3' miRNA: 3'- -CGGCugUA---------------GUCUGGCCGG---UGG--UCG--CC- -5' |
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22272 | 3' | -58.5 | NC_005045.1 | + | 34407 | 0.68 | 0.403111 |
Target: 5'- uGCCGcgugaGCAcCAGcUCGGCCccguugcacagcggGCCAGCGGc -3' miRNA: 3'- -CGGC-----UGUaGUCuGGCCGG--------------UGGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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